Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02118 and BL03835
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_02118___xkdB.1.5803.seq
# -bsequence dna-align/BL03835___xkdB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02118___xkdB-BL03835___xkdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02118___xkdB-BL03835___xkdB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02118___xkdB
# 2: BL03835___xkdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 919
# Identity: 571/919 (62.1%)
# Similarity: 571/919 (62.1%)
# Gaps: 170/919 (18.5%)
# Score: 1668.5
#
#
#=======================================
BSNT_02118___ 1 ATGAAAAAC----------GATAAAAGCTATCCTTTTCCGACGTATTCAG 40
||| .| |||.||||||||||.|||.||...||.||||
BL03835___xkd 1 ATG----TCCCGCCCGCCGGATCAAAGCTATCCCTTTTCGGTTTACTCAG 46
BSNT_02118___ 41 GGTTATTGAATTCAGAACATTATGACAAAATGGGCCCGGCGCTATGGTTG 90
||.|.||.|...|.|..||.||.||.|||||.|||...||..|.|||.|.
BL03835___xkd 47 GGCTTTTAACACCTGTTCACTACGAGAAAATAGGCAATGCCATTTGGCTT 96
BSNT_02118___ 91 TTTCTCTGGTTTATCAGCTCAACAACAAAAGAAATCGAAAAAGACGGGGT 140
|||.|.||||..|||||.|||||||||||.|||||||||...||.||||.
BL03835___xkd 97 TTTTTATGGTGCATCAGTTCAACAACAAAGGAAATCGAACGCGATGGGGA 146
BSNT_02118___ 141 AAGCTGGGGCATCGTACTCGGCCATAAGCCGTTAAAAGCGAG-AGAAATG 189
.|..|||||||||||.||||||.|.||||||.|.||||| || .|||.||
BL03835___xkd 147 GACATGGGGCATCGTGCTCGGCAACAAGCCGCTGAAAGC-AGCCGAACTG 195
BSNT_02118___ 190 GCGGCAGTC-----TTCGGCGTAAGTGAAAAAACCGTCAGAAGATGGCTG 234
|| || ||||||||.|..||||||||..|||||||||||||.
BL03835___xkd 196 GC-----TCTTCAATTCGGCGTCAACGAAAAAACGATCAGAAGATGGCTC 240
BSNT_02118___ 235 GAGCTTCTCGA---AAACCATGATTACATAAAGGCCGTC---CGTGCGCC 278
|..|||||||| |||| |..||||| .||.||| .|.|||||
BL03835___xkd 241 GCTCTTCTCGAACGAAAC---GGCTACAT---TGCAGTCACAAGAGCGCC 284
BSNT_02118___ 279 ATACGGACTGATGATTTCGGTCAAGCATTCCAAAAAATT---------CA 319
.||||||.||||..|.||.||||..|||||.|||||||| ||
BL03835___xkd 285 TTACGGAATGATTTTGTCAGTCAGACATTCAAAAAAATTTGCCTACGCCA 334
BSNT_02118___ 320 GCTTCAGATCGGACAATACTGTACACGGGAGTCTAAAAGAACGGCCATTT 369
|| ||..|| |.||.|||||.||| |..
BL03835___xkd 335 GC--CATGTC----------------------CGAACAGAACTGCC-TGA 359
BSNT_02118___ 370 TCG--CCGCAGACAC--------CGGACA--------CAAACGACCGTAC 401
||| |.|.|||.|| |||||| |||.| |..||.
BL03835___xkd 360 TCGGACAGAAGAGACTGGCAGTGCGGACAAGCTTGTCCAATC--CAATAA 407
BSNT_02118___ 402 AGATAT-AGATAAAACAA-AC-AAATATACTGCTGCTGATGA--TGCAGT 446
|||||| |.|.|||.||| || |||.|||.| |||| |.||..
BL03835___xkd 408 AGATATCACACAAATCAACACAAAACATAAT-------ATGAGTTCCATA 450
BSNT_02118___ 447 GGATCACATTGC-GAAGCGGTTT-----ACACAATTACGGTCGGCTCAAG 490
..|.|| ||.|| ||| ||.||| .|.|| |||||...||.|
BL03835___xkd 451 AAAACA-ATAGCAGAA-CGATTTGCCGCCCTCA-----GGTCGATGCAGG 493
BSNT_02118___ 491 AAGG-ACGCACCGTGTATCCTTCCTCAAGAGATTATCAAGCCATCGCCCG 539
|||| |.|| ||||..||||.||.||||.|||.|||||.|||||||||||
BL03835___xkd 494 AAGGAAAGC-CCGTCCATCCCTCGTCAAAAGACTATCAGGCCATCGCCCG 542
BSNT_02118___ 540 CATTGTTGCCATCGGCGTTCCTGTCATGCAAACAATCAAATGGCTTGAAG 589
.|||||.|||..|||.||..||.|...||||||||||||||||||||||.
BL03835___xkd 543 GATTGTCGCCCGCGGAGTGTCTCTTCCGCAAACAATCAAATGGCTTGAAC 592
BSNT_02118___ 590 AATGCTTTCAGACTTTTGAAAACCGGCGGACCGCCG----CTTC-TGAAA 634
||||.|||.||...|.||| ||||...||||| |.|| |||||
BL03835___xkd 593 AATGTTTTGAGGAGTATGA-----GGCGCGGCGCCGAAGCCGTCATGAAA 637
BSNT_02118___ 635 CAATCAAGGCTTTTC-GCTACTGCTCGAAAT---TCAT------------ 668
|.||||||| |.||| |||||||....|||| ||||
BL03835___xkd 638 CGATCAAGG-TCTTCAGCTACTGTGAAAAATATATCATCGGCCGGCTGGC 686
BSNT_02118___ 669 TGAAGACAGATTTTTCGCGCAGCAAGCCAAAAAGAATGCCGCAATTCAGC 718
||||| .|.||||.||||.||| || ||.|
BL03835___xkd 687 TGAAG---------------CGGAAGCGAAAACGAA------AA--CAAC 713
BSNT_02118___ 719 ATGAGAGGATGAAAAAACATGACAAAACGAACAATCGAACAGATTTTGGA 768
||..||||.|.|.||..|||.|.|||.|||||||||||.||.|..||||
BL03835___xkd 714 -TGTCAGGAGGGAGAACAATGCCCAAAAGAACAATCGAAGAGGTCATGGA 762
BSNT_02118___ 769 CGAGCTGAGAAGAGGGAGACGTCCATTACTGGCGGACAAACCGGCCGAAT 818
|||.|||||||...||||.||||.||.||.||.||.||||||||..||||
BL03835___xkd 763 CGAACTGAGAAACAGGAGCCGTCAATCACAGGGGGGCAAACCGGAAGAAT 812
BSNT_02118___ 819 CAGACGCAAGCAGGTATGA 837
|.|.|||||...|||||||
BL03835___xkd 813 CCGCCGCAAAACGGTATGA 831
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