Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02123 and BL03833
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_02123___xkdD.1.5803.seq
# -bsequence dna-align/BL03833___xkdD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02123___xkdD-BL03833___xkdD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02123___xkdD-BL03833___xkdD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02123___xkdD
# 2: BL03833___xkdD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity: 228/385 (59.2%)
# Similarity: 228/385 (59.2%)
# Gaps: 77/385 (20.0%)
# Score: 563.0
#
#
#=======================================
BSNT_02123___ 1 GTGAAAGTGTTGGCAAAGACAAAACAGGCAGAGAAAAGCCCTGCGCCGTG 50
|||||| ||.|| ||...|||| |.|.|||||..|.||.||
BL03833___xkd 1 GTGAAA--------AACGA-AAGTGAGGC---GTACAGCCCATCACCATG 38
BSNT_02123___ 51 GCGTGCTGTCCCATGCGGGGATACGAA-ACCGA--TCTATATTTATTCAG 97
|||.|..|||..| ||.|| ||||| |.||.||||||||||
BL03833___xkd 39 GCGCGTCGTCAGA---------ACAAATACCGACGTATACATTTATTCAG 79
BSNT_02123___ 98 CTTACAGTGAAGAAGAAAAAGAAA-GATTCCCATATTCAAACGGACGGCT 146
|.|||||..|||..| |||||||| |.||..|.|||||.||||||.||.|
BL03833___xkd 80 CATACAGCAAAGCCG-AAAAGAAACGGTTTTCTTATTCCAACGGAAGGGT 128
BSNT_02123___ 147 GATTGCCGCTGTATTTGACCTTAGCTCTTATTC---GCAAAAAAGCAATG 193
|||||||...||....|||...|||.|.||||| |.||||| ||||
BL03833___xkd 129 GATTGCCAAAGTCGCCGACTACAGCGCATATTCCAAGGAAAAA---AATG 175
BSNT_02123___ 194 -CCGCTTTGATGGCCGCTGCGCCTGAATTGCTG--------GAAGCGTCT 234
|||| ||.||.||.||.||.||.|||.||.|| ||||| ||
BL03833___xkd 176 CCCGC-TTAATCGCTGCAGCTCCCGAACTGTTGACCGCAGTGAAGC-TC- 222
BSNT_02123___ 235 AAAGCAGCACTTGATTTTCTGAAAGGGAATTCTGTTCATTCAAAG-GA-- 281
.|.||||..|.|.|| |||.|||..|.|..|.||||.|| ||
BL03833___xkd 223 ------ACGCTTGCCTATTTG-AAGCGAAAACGGCCCGTTCACAGCGATT 265
BSNT_02123___ 282 -----GCGCATCATTCTG------CTATTAGAAAAAGCTGAAGCAAGCGC 320
|.|.||||.| || .|.||||||||||..|..||||..|
BL03833___xkd 266 CAGTTGAGAATCAAT-TGAAGAATATTTTAGAAAAAGTCGTCGCAAAAG- 313
BSNT_02123___ 321 TGCACCGAA----AAGGGGAGGAAAAGAAACATGA 351
|.||| |||.|||||||| .||.||||
BL03833___xkd 314 ----CAGAATTTGAAGAGGAGGAAA--CAAGATGA 342
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