Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02125 and BL03832
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_02125___xtrA.1.5803.seq
# -bsequence dna-align/BL03832___xtrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02125___xtrA-BL03832___xtrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02125___xtrA-BL03832___xtrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02125___xtrA
# 2: BL03832___xtrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 228
# Identity: 138/228 (60.5%)
# Similarity: 138/228 (60.5%)
# Gaps: 45/228 (19.7%)
# Score: 375.0
#
#
#=======================================
BSNT_02125___ 1 ATGATTCATCCTAAAA----AACTGCTGCATAT---CGATTCCATCACGC 43
||||..|||||...|| |||.| |||| |||| |..|||.
BL03832___xtr 1 ATGAACCATCCGGCAAAGTTAACAG----ATATCAACGAT---ACGACGG 43
BSNT_02125___ 44 TTAAGAGCCAGCTGGAGGAAGGGAAA----------ATCCGTGTCATTAT 83
||...|||| ||...|..||.||||| ||| |||.||
BL03832___xtr 44 TTGCAAGCC-GCATCAAAAAAGGAAAGGTGACGGTGATC---GTCCTT-- 87
BSNT_02125___ 84 TGTGGATGGCATCAA--GCAAGAAGCATGGATCA--CAGAAGCGCCCGAG 129
||.||.||.|| |||.| |||||| || |.||.|||||.|||
BL03832___xtr 88 ----GACGGAATGAACGGCACG--GCATGG--CAGGCCGAGGCGCCTGAG 129
BSNT_02125___ 130 CATGGAAAAACGCTCGTCGAAACAAGAAAGGGCGATCTTGCCCGTGTGGA 179
||.||.|||||..||.|.|||||.||||||||.|||||.||..|..|.||
BL03832___xtr 130 CACGGCAAAACCGTCATTGAAACGAGAAAGGGAGATCTCGCAAGGATCGA 179
BSNT_02125___ 180 ATTTGAAATCGGCTACAAATTAAATTAA 207
|||||||||||||||.||..||.|.
BL03832___xtr 180 ATTTGAAATCGGCTATAAGCTATAG--- 204
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