Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02127 and BL03830

See Amino acid alignment / Visit BSNT_02127 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_02127___xtmA.1.5803.seq
#    -bsequence dna-align/BL03830___xtmA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02127___xtmA-BL03830___xtmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02127___xtmA-BL03830___xtmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02127___xtmA
# 2: BL03830___xtmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     591/837 (70.6%)
# Similarity:   591/837 (70.6%)
# Gaps:          75/837 ( 9.0%)
# Score: 2065.5
# 
#
#=======================================

BSNT_02127___      1 ------ATGAAAA------CACAACAGCGCGAACAAGCATTAGCAATCTA     38
                           |.|||||      ||.||   .|.||..||||.||.....||||
BL03830___xtm      1 ATGCCAAGGAAAAGGGATCCAAAA---AGGGATGAAGCTTTTCGTCTCTA     47

BSNT_02127___     39 TCAACAACATCAAGGAAAGATCACAAATCGGGCGATTGC-GGACACAATC     87
                     ||||.||.|....|||||.||.||.||||..||.||.|| .||.| |.||
BL03830___xtm     48 TCAAAAATACGGGGGAAACATTACGAATCTCGCAATCGCAAGAGA-ACTC     96

BSNT_02127___     88 GGTGTTTCCGCGAAAACAATCGGCATCTGGAAAAAACAAGACAAATGGAA    137
                     ||.|||||....||||.||||.||.|.|||||||..|..|||...|||.|
BL03830___xtm     97 GGCGTTTCAAATAAAAAAATCAGCGTTTGGAAAACCCGCGACCGCTGGCA    146

BSNT_02127___    138 AGAGGCGCTGTTTT--------CTG-CGTCCAAAAACGAAC-----AAAA    173
                     ||||||     |||        .|| ||        |||||     ||||
BL03830___xtm    147 AGAGGC-----TTTAGCCGGAGATGACG--------CGAACCGTGGAAAA    183

BSNT_02127___    174 ACAGCGCCCTATAAACA---ACGATGAA---TTAAATGAACGCCAGCGGC    217
                     .|||          |||   ||.|||||   .|.||||||||.|||||||
BL03830___xtm    184 GCAG----------ACATTCACAATGAAGGGCTGAATGAACGGCAGCGGC    223

BSNT_02127___    218 TGTTTTGCCTGTATTACGTCAAAAGCTTCAATGCCACACAGTCAGCAATC    267
                     ||||||||.|.|||||.||.|||||||||||||||||.||..|.||..|.
BL03830___xtm    224 TGTTTTGCATCTATTATGTGAAAAGCTTCAATGCCACCCAAGCGGCGGTA    273

BSNT_02127___    268 AAAGCGGGCTATTCTCCGGACAGCGCTCATGTGACGGGCAGCCGACTCTT    317
                     ||||||||||||||.||||.||||||.||||||||.|||.||||.||.||
BL03830___xtm    274 AAAGCGGGCTATTCCCCGGCCAGCGCCCATGTGACAGGCTGCCGGCTTTT    323

BSNT_02127___    318 AAAAAACGAAAAGGTCGCTGCTGAAATTAGACGCATTAAAAAAGAAATGG    367
                     .|||||.||||||||.||.|.||||||.||.||.||.|||||||||||||
BL03830___xtm    324 GAAAAATGAAAAGGTGGCCGATGAAATCAGGCGAATCAAAAAAGAAATGG    373

BSNT_02127___    368 TCAATGAAATGTTTATTGAAGCGATGGATGTGCTGCAGGTTTATATCAAG    417
                     |....||.||.||..|.||.|||||||||||.||.||.||.|||.|.||.
BL03830___xtm    374 TAGGGGAGATATTCGTCGAGGCGATGGATGTTCTCCAAGTCTATGTAAAA    423

BSNT_02127___    418 ATCGCGTTTGCGGATATTACGGACTATGTGACCTTTGGAAAAAAAGAGGT    467
                     |||||||||||.|||||.||.||.||||||||.||.||.|||||||||||
BL03830___xtm    424 ATCGCGTTTGCCGATATGACCGATTATGTGACTTTCGGCAAAAAAGAGGT    473

BSNT_02127___    468 CCAGGCTGTCGGGAAATCGGGTCCGCTGTTTGATGAAGATGATAATCCGA    517
                     .|||||||||||.||.||.||.|||||||||||||||||..|.||||||.
BL03830___xtm    474 ACAGGCTGTCGGAAAGTCCGGACCGCTGTTTGATGAAGAAAACAATCCGG    523

BSNT_02127___    518 TTATGAAGGAAATCAGCTTTGTCGATGTCAAAGACTCCGGGCTCGTTGAT    567
                     |||||||.||..||||||||||.|||||.|||.|.||||..|||||.|||
BL03830___xtm    524 TTATGAAAGAGGTCAGCTTTGTGGATGTGAAACATTCCGACCTCGTCGAT    573

BSNT_02127___    568 GGCACCATTGTAACGGAAGCAAAGCTTGGGAAAGAAGGCATTGCCATCAA    617
                     |||||..|..|.||||||||.||.||.|||||||||||.||.||.|||||
BL03830___xtm    574 GGCACAGTCATCACGGAAGCGAAACTCGGGAAAGAAGGGATCGCGATCAA    623

BSNT_02127___    618 GCTTGCAGATAAAATGAAGGCGCTTGAGAAGCTATCCTTATATTTTGATT    667
                     |||.||.|||||||||||||||||.||.|||||.||....||||||||..
BL03830___xtm    624 GCTGGCCGATAAAATGAAGGCGCTCGATAAGCTCTCACAGTATTTTGACC    673

BSNT_02127___    668 TGTTTCCAGATCAATTTAAACAAAAAATTGAAAATGAGAAATTGAAGCTT    717
                     |.||.||.|||..||||||.|..|||||||||||||||||..|||||||.
BL03830___xtm    674 TTTTCCCTGATTCATTTAAGCGGAAAATTGAAAATGAGAAGCTGAAGCTC    723

BSNT_02127___    718 GCCAAACAAAAAGCGGAGAAAACAGAT---GACAGCCAGGAGCCGATTGA    764
                     ||||.|||||||||.||.||   ||||   ||.|  |.||..||| ||||
BL03830___xtm    724 GCCAGACAAAAAGCCGACAA---AGATGCGGAAA--CGGGTCCCG-TTGA    767

BSNT_02127___    765 AATTATGATCAAACGAAAA---GAGCGCAAGTCATGA    798
                     |.|..|.|||...||||||   ||.|   ||.|.|||
BL03830___xtm    768 AGTGGTCATCGCCCGAAAAGGTGATC---AGGCTTGA    801


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02127 and BL03830

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
