Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02132 and BL03827
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_02132___xkdF.1.5803.seq
# -bsequence dna-align/BL03827___xkdF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02132___xkdF-BL03827___xkdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02132___xkdF-BL03827___xkdF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02132___xkdF
# 2: BL03827___xkdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 911
# Identity: 599/911 (65.8%)
# Similarity: 599/911 (65.8%)
# Gaps: 145/911 (15.9%)
# Score: 1855.5
#
#
#=======================================
BSNT_02132___ 1 GTGGCGCGAGA-ATTAAGAAATGCCAAAATCAGCTTTGTCAGTTATGTGG 49
|||.||.|||| .|||| ||||||||||||||..||.|||||||||||.|
BL03827___xkd 1 GTGCCGAGAGAGCTTAA-AAATGCCAAAATCAATTTCGTCAGTTATGTCG 49
BSNT_02132___ 50 ACAAGGCGGCTAACCAGACAG-AATTTTTCTTTACGAAGTC-AGCCAAAC 97
||||.|||||.|| ||.|.|| ||||.|||.|.|||||||| || ..|||
BL03827___xkd 50 ACAAAGCGGCGAA-CAAAAAGAAATTCTTCATGACGAAGTCGAG-TGAAC 97
BSNT_02132___ 98 CTCCGTCATTTGAAAAAAAGGTTCGGCTGTTTACAAAAAGTGAGC--AGG 145
|.|||.|||||.||||..|.||...||||.||.|||| ||| |||
BL03827___xkd 98 CGCCGACATTTCAAAAGGAAGTCAAGCTGATTGCAAA-----AGCCGAGG 142
BSNT_02132___ 146 ATGAACAAAAGCTCGTGTACGGAATCGTGTATGAGCCTGATGTTCCTGAT 195
|||||.|.||||||||.|||||..|.||.||.|||||.||..|||..|||
BL03827___xkd 143 ATGAAAAGAAGCTCGTCTACGGCGTTGTCTACGAGCCGGACATTCAGGAT 192
BSNT_02132___ 196 GCCCACGGCGATTTTATGACCGCCGAGGAAATTGAAAAAGCGGCGCACGG 245
|||||||||||.||||||||.||.||.|||||..|||||||.||.|||||
BL03827___xkd 193 GCCCACGGCGACTTTATGACGGCTGAAGAAATCCAAAAAGCCGCCCACGG 242
BSNT_02132___ 246 TTTTCTCGCGG----AGGCACGGGAGATTGATATCAATCACAGCTTTGAG 291
|||||| | |.||.|||.||||.||.|...||||||..||..||
BL03827___xkd 243 TTTTCT----GAAAAATGCCCGGAAGATCGACAAGGATCACAATTTCCAG 288
BSNT_02132___ 292 GGCGGAACCGGCGTCGTGGTCGAGTCCTATGTGGCGCCCGATGATTTTAT 341
||.||...|||.|..||.||.||||||||.||.|||||.|.|||||||
BL03827___xkd 289 GGAGGCGTCGGAGAAGTCGTGGAGTCCTACGTAGCGCCGGCTGATTTT-- 336
BSNT_02132___ 342 GATCGGATCAAA--GCG----GATTACAAAGGGCTCATGGGTACTCGTGA 385
|.|..||| ||| ||||...||.|||||.|||||.||.||||
BL03827___xkd 337 ----GAAGTAAACGGCGAAACGATTGTGAAAGGCTCTTGGGTGCTGGTGA 382
BSNT_02132___ 386 CAAGAG-CGTCTGATGAGGTGTGGGAACAGATTAAGGCTGGAATTATCAC 434
|||.|| ||.| ||||||.|.||||||||||||||....||||..|||||
BL03827___xkd 383 CAAAAGCCGGC-GATGAGATCTGGGAACAGATTAAAAAAGGAAGCATCAC 431
BSNT_02132___ 435 CGGCTACAGCATGGCTGGCACTGCAGATGTGTATGAAGAAGAACCGGTCG 484
|||||||||||||||.|||||||| .|||.||||||
BL03827___xkd 432 CGGCTACAGCATGGCGGGCACTGC---------------CGAAACGGTCG 466
BSNT_02132___ 485 A-----------------------AAA------AGCAGGG----TTCTTT 501
| ||| |||..|| ||||||
BL03827___xkd 467 AGCACGCGCCCCAAGCCGACTCTGAAACCGATGAGCCCGGCAGTTTCTTT 516
BSNT_02132___ 502 -AG-TGTATTCAAGCAAATGCTTGCTG-------ACAAAACA-GGGAAGG 541
|| || ||.|||||..|..||||.| ||||||.| |||| |
BL03827___xkd 517 CAGCTG--TTTAAGCAGTTTTTTGCCGGCGACAAACAAAAAACGGGA--G 562
BSNT_02132___ 542 AGACTGAAGAAATGAGAAAAGAAGACATGAAAGAATCA----TTCGAGCA 587
|| ||||||| ||||| ||||||..|||| |||.||.|
BL03827___xkd 563 AG---GAAGAAA----AAAAG-----ATGAAACGATCAGAAGTTCAAGGA 600
BSNT_02132___ 588 -----TG----CG-CTTTAC-CCTCTGCTCAAACGGCTTGAGCGGATTGA 626
|| || |||..| ||.||.||||||||.||||| ||..|||.
BL03827___xkd 601 ACGATTGAAGCCGTCTTGGCTCCGCTTCTCAAACGTCTTGA-CGATTTGG 649
BSNT_02132___ 627 AA------AAAACACAGACACGGAGGAAAAGCCGGAGCAGACGGGTGATG 670
|| |||.| |.|| ||.|||||...|.|.|||||.|...|.|
BL03827___xkd 650 AAGGGGATAAAGC---GGCA--GATGAAAAAGAGCAACAGACAGACCAAG 694
BSNT_02132___ 671 ACGAGCGTCTGAA--AAAGCTCGTTGAAGACATGCTTGCCCCGCTGATCG 718
|||..|.|.|||| ||| ||||.||.||||||||.|||||.||.||.|
BL03827___xkd 695 ACGCACATGTGAAGGAAA--TCGTCGAGGACATGCTCGCCCCTCTTATTG 742
BSNT_02132___ 719 AACGCATCGAGGCTTTGGAATTAG-CGCGAGGCGCGTCTAAGCAGACAGC 767
.||||||.||.||..|.||| .|| .|.|||||||.||.||||||.||||
BL03827___xkd 743 CACGCATTGAAGCACTCGAA-AAGATGAGAGGCGCCTCAAAGCAGGCAGC 791
BSNT_02132___ 768 GGACGATACGGGCGGCAATACAGAGCAAGTCAAAAAATCAATCTGGAGCG 817
.|.|||.|..|.|||..| |||..||||.||||||||.||.|||||||
BL03827___xkd 792 AGCCGAAAAAGACGGGGA---AGAAGAAGTTAAAAAATCGATTTGGAGCG 838
BSNT_02132___ 818 GACTGCTGTAA 828
||.||||.|||
BL03827___xkd 839 GATTGCTTTAA 849
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