Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02153 and BL03814
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_02153___xkdR.1.5803.seq
# -bsequence dna-align/BL03814___xkdR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02153___xkdR-BL03814___xkdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02153___xkdR-BL03814___xkdR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02153___xkdR
# 2: BL03814___xkdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 335
# Identity: 177/335 (52.8%)
# Similarity: 177/335 (52.8%)
# Gaps: 94/335 (28.1%)
# Score: 468.0
#
#
#=======================================
BSNT_02153___ 1 ATGAGATTAAGTGAGGCTATAAAACATTTGGCAGTCGGCGCAGTTGACGC 50
||||.||||||.||.||.||||||.|..||||..|.||.||.||..||||
BL03814___xkd 1 ATGAAATTAAGCGATGCGATAAAAGAGCTGGCTCTTGGAGCCGTAAACGC 50
BSNT_02153___ 51 TGAGTCTCCGGTAGAACTGCTCCCGGCTGAAGTCGTTTCGGTTTCTCCTG 100
|||.||.||.||.||..|..|.||||||||||||||.||.|..||||| |
BL03814___xkd 51 TGAATCGCCTGTCGATGTCATGCCGGCTGAAGTCGTGTCCGCGTCTCC-G 99
BSNT_02153___ 101 -------TG-------GAAATCAAATTAAA-------------------- 116
|| |.|||||...||||
BL03814___xkd 100 CTCAAGCTGAAGCTCCGCAATCATGATAAATTGGTGATCCCCTCCGACTT 149
BSNT_02153___ 117 -------------AGAAAACAGCA---AACTGATCATACCGGAAGACGCC 150
|| ||| .||.||.|||| |||||.|
BL03814___xkd 150 ATTGGTGGTGGCCAG------GCATTTGACAGAGCATA-CGGAACA---- 188
BSNT_02153___ 151 ATCATTATCCCAAAACGAATGCAGTCCGGAGGAG-----ACGATGCACTC 195
.||| |||||..| |||||.|| |||||.|.||.
BL03814___xkd 189 -----GATC------CGAATTGA---CGGAGAAGACAAAACGATTCGCTT 224
BSNT_02153___ 196 GAAC-------------CGGGGGATCGCCTCATGACCGCGGCTCTGACTG 232
..|| |.||.||.|.|.|.||||..||||||.||.|||
BL03814___xkd 225 TTACAATCAATTGCATGCCGGCGACCACGTGATGATTGCGGCTATGCCTG 274
BSNT_02153___ 233 GCGGGCAATCGTTTTTTATTTTAGATAAGGTATAG 267
|.|||||.||.||||||.|..||||.|..||.|||
BL03814___xkd 275 GAGGGCAGTCTTTTTTTGTAATAGACAGAGTGTAG 309
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