Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02156 and BL03811
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_02156___xkdU.1.5803.seq
# -bsequence dna-align/BL03811___xkdU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02156___xkdU-BL03811___xkdU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02156___xkdU-BL03811___xkdU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02156___xkdU
# 2: BL03811___xkdU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1019
# Identity: 375/1019 (36.8%)
# Similarity: 375/1019 (36.8%)
# Gaps: 538/1019 (52.8%)
# Score: 931.5
#
#
#=======================================
BSNT_02156___ 1 TTGAGCAAACAAGATGACATGAGAGCTT---ATCTGCCGCCGTTTCTCAC 47
||||||||....|||||.||| |||| |.||||||||.| ||
BL03811___xkd 1 TTGAGCAAGATTGATGAAATG---GCTTTTCACCTGCCGCCAT-----AC 42
BSNT_02156___ 48 --------CAGCC------TTAAAGAAAT------GGCTGAGCTGCTGAA 77
.|.|| ||.||||||| ||||
BL03811___xkd 43 TTGATGGAAATCCGGGAAATTCAAGAAATTATAACGGCT----------- 81
BSNT_02156___ 78 AGCGGAAGCGCCTGAGTTTGATAAACAAAATGACAGCATATTT--GATCT 125
|||||||||||.|||||.|..|||||| ||..|.|||| |||.|
BL03811___xkd 82 ----GAAGCGCCTGAATTTGAGAGGCAAAAT--CAAGAGATTTTCGATAT 125
BSNT_02156___ 126 GACGGATCAGTTATTCGTACCGACGGCGACATGGGGGCTCAGCCGCTGGG 175
||||||.|||.|.|||||..|||||||.|||||||||||...|.|.||||
BL03811___xkd 126 GACGGACCAGCTTTTCGTCACGACGGCCACATGGGGGCTGGACAGGTGGG 175
BSNT_02156___ 176 AAAAGATTTTAAATGT----------GCCTCGGGAATCA-GGCGACACAG 214
||||||||||.||||| ||.|||| | ||||.|
BL03811___xkd 176 AAAAGATTTTGAATGTCAGACGCGAGGCTTCGG-----ACGGCGTC---- 216
BSNT_02156___ 215 ATGAGATCAGACGATTGCGGCTCATTT-----CCAAAATGTCGAACATCC 259
||.||..||.| |||.|.|.| ||||.|||||.||.||.|
BL03811___xkd 217 --GATATTCGAAG-----GGCCCGTCTGTTAACCAAGATGTCCAATATTC 259
BSNT_02156___ 260 CGCCAATCACATATAGGGCC-----ATTGAGCAGGCGGTAAACCGTTTCT 304
||||.||.||| .||| ||.||||..|||||.||...|||.|
BL03811___xkd 260 CGCCGATTACA-----AGCCGCTCGATCGAGCGCGCGGTTAATGCTTTTT 304
BSNT_02156___ 305 TGAAAAACCCGTCTGCACAGGTCCGCCTGCTTCCCGGCGAATACCGATTT 354
|.|||.|.|||||.||| ||||.|.|..|..||| |||
BL03811___xkd 305 TAAAACAGCCGTCCGCA----TCCGTCAGACTGACGG------CCG---- 340
BSNT_02156___ 355 AACGTCGATATCAATGTT-----------------GATGACCTCCAG--- 384
|.||.|||||.|.|| ||.||.||.|||
BL03811___xkd 341 ---GACGGTATCATTTTTTGCTGAGTGTAAACGGAGAGGATCTGCAGTTT 387
BSNT_02156___ 385 ---CACATGAATGAGCTGATCGAAGCGATAGAAAACATGAAACCCGCTCA 431
| |.|.|||.| .||.||.|| |..|..|.|||||.|||||.||
BL03811___xkd 388 ATAC-CTTCAATCA----TTCAAACCG-TCAATCATATGAAGCCCGCCCA 431
BSNT_02156___ 432 TTTGGCGTATACGCTCAGAGGCGGAT-------TGAATG--AGACGCTAC 472
||||||.|||||..||.|.|||||.| |||||| .|.||| |
BL03811___xkd 432 TTTGGCTTATACATTCCGGGGCGGGTTTCATTATGAATGTCGGCCGC--C 479
BSNT_02156___ 473 AAATCAAAG-----AT-ACAGTCATCCT-----GAATC----ACCGC--- 504
.| |||| || ||||.| ||.| |||.| ||.||
BL03811___xkd 480 GA---AAAGCGTTCATGACAGGC-TCGTTTTAAGAAGCAAAAACGGCTTT 525
BSNT_02156___ 505 -------AGATACC---------GAACAGCCAGTGAGCTCAAGGTCGGTT 538
.|||||| |.||.|.|||| |.|| |.||
BL03811___xkd 526 TTCGGTACGATACCGGTCTATTTGGACGGACAGT-ATCT-------GCTT 567
BSNT_02156___ 539 --------ATTCTGTCACTCTTAACAACAATGAGGTGGTTTT----AACT 576
||||| ||| |.||| |||||| ||.|
BL03811___xkd 568 GATGATGCATTCT---ACT-TGAAC-----------GGTTTTCGAGAAAT 602
BSNT_02156___ 577 TGA----------------------------------------------- 579
.||
BL03811___xkd 603 CGACGGACTGCCCCGCAGGTTTAAACAGCAGCTCACACTGCGCCACAAGA 652
BSNT_02156___ 579 -------------------------------------------------- 579
BL03811___xkd 653 AGCGGCAATACATTCGGTCCGCCTCCAGCTTTACGATAAAGACGGCCGCT 702
BSNT_02156___ 579 -------------------------------------------------- 579
BL03811___xkd 703 GAAAACCGGCGGAAACAGCAAACAAAAGCTGGCATGAAAACCGGCATTAC 752
BSNT_02156___ 579 -------------------------------------------------- 579
BL03811___xkd 753 CAATCAAAACAAAAAGGTCCAATCCTTCAAAATCAGCTGCAAATGCGAAC 802
BSNT_02156___ 579 -------------------------------------------------- 579
BL03811___xkd 803 ATGAATTTAAGCAAGCAGGCGCGCTTGAAATGAGAGAGAAGTGGTGGACG 852
BSNT_02156___ 579 -------------------------------------------------- 579
BL03811___xkd 853 CTAAACGGCGCATTTTTGCTCGACGGTACAAAGCAGCTGGCAGCAGCGGC 902
BSNT_02156___ 579 ------------------- 579
BL03811___xkd 903 GCAAAAAATCGCATTGTAA 921
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