Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05226 and BL03808
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_05226.1.5803.seq
# -bsequence dna-align/BL03808.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05226-BL03808.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05226-BL03808.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05226
# 2: BL03808
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity: 218/977 (22.3%)
# Similarity: 218/977 (22.3%)
# Gaps: 703/977 (72.0%)
# Score: 334.0
#
#
#=======================================
BSNT_05226 0 -------------------------------------------------- 0
BL03808 1 TTGGACATCCAAAAACCGAGATCTTTCAGAACGACGGACAGAGCCCATGC 50
BSNT_05226 0 -------------------------------------------------- 0
BL03808 51 CGATTTGTTTAATCAGGTTATCGACCAGCTGAATGCAAATGATGAGTCGA 100
BSNT_05226 0 -------------------------------------------------- 0
BL03808 101 TTGCACAGTTTGCCGCCGAAGCTGAACAACGTTCAACTGCCTATACAGAT 150
BSNT_05226 0 -------------------------------------------------- 0
BL03808 151 GCACACATTTCGAACAAAGGTAACCCGCATGGTGTAACAAAATCCCAGGT 200
BSNT_05226 0 -------------------------------------------------- 0
BL03808 201 CGGTCTGGGGGAAGTGATCAATAAAAGACAGGCCACAAAAGATGAGTTTG 250
BSNT_05226 0 -------------------------------------------------- 0
BL03808 251 ACTTGCATCATAACGATCAAACACGGCATGTTACTGAAGATGAGAGAAAT 300
BSNT_05226 0 -------------------------------------------------- 0
BL03808 301 AAATGGAATGGAAGTCAAATTTTTAATATTACCGGGGACAATGGACAAGC 350
BSNT_05226 1 ----------------------------TTGCAGAACG------------ 10
||.|| ||||
BL03808 351 AAAGGTATATATAAGCGCCGAAGATGACTTTCA-AACGATCCTACCTCAG 399
BSNT_05226 11 ---GCTGGTCTCACTACA----ACGGCGGC----GAAGATGTA------- 42
.|.||.||.| |||| |||||.|| |.||.|.||
BL03808 400 TATACCGGACTGA-TACATTTTACGGCAGCCTCAGGAGCTATAAACGGAC 448
BSNT_05226 43 -----------GTT-------TTTGGAATTG--ACGC------------- 59
||| ||||||.||| ||||
BL03808 449 CAGGTGCGGCCGTTCGAGGGATTTGGACTTGCAACGCTTTAGGTAACTAT 498
BSNT_05226 60 -GTC-------------------------------------GAAAACAGT 71
||| |||||||.|
BL03808 499 GGTCAAGCGATCGCGTTTGACAATGCAAATAGAACCTATCGGAAAACAAT 548
BSNT_05226 72 A--TGGGTGCGAGGGGA----------AGCA-------------AAAG-- 94
| .|||.||.|..||| ||.| |.||
BL03808 549 AGCCGGGGGCAACTGGACTGACTGGACAGAATTAATTTCCGCGGAGAGTC 598
BSNT_05226 95 --GAGGC---GTTG-----------TTGGAA-----CGACTGTTTTTACA 123
||||| |||| ||||.| |.|| |.|||||.|
BL03808 599 TCGAGGCAAAGTTGGCGAACTTAACTTGGCACTTTCCAAC-GCTTTTAAA 647
BSNT_05226 124 CTCCCTGA-------AAACATGCGGCCGCCACGATCTATGGGTTG-TATA 165
| || ||..||||||.|..|| |||..|.|.| ||||
BL03808 648 C-----GAATGGGTTAATTATGCGGACAGCA----CTAAAGTTCGTTATA 688
BSNT_05226 166 CAAATAGCAT----CAGGATCGGCA-------CAGGT------------- 191
|||| || || ||||..|||.| .||||
BL03808 689 CAAA-AG-ATGCCACAGGTACGGTATTTGTTGAAGGTGCAATAGCAAAAG 736
BSNT_05226 192 ----------------------TGC--TCGGATTGC-------ATA---- 206
||| |||.||||| |||
BL03808 737 GGAAAATTGGTTTTAATATACCTGCATTCGTATTGCCGAAAGGATATCGG 786
BSNT_05226 207 -------------------------------CAAATCTACTGGGGAAGTC 225
||..||.|.||||.|.|||
BL03808 787 CCGTCCCGCGCTTTTCAGTTTGTAGGTGTAGCATCTCAATTGGGCATGTC 836
BSNT_05226 226 --------------ATCGTAG----------------------AAAG-CG 238
|||.||| ||.| ||
BL03808 837 CAATACTCCGCAGTATCATAGGCTGCAAGTGAGTGTTGATGGTAATGTCG 886
BSNT_05226 239 T-----------------ATCCAGTAACCCGAACT--ATAT-TAAATTT- 267
| ||.||||||..|.||.| |||| |.|.|||
BL03808 887 TGATCGAAAACTGCTCAAATACAGTAAATCCAAATGAATATATCAGTTTA 936
BSNT_05226 268 -GATTTCGCGTTTAAAGCGCTGTAG-- 291
||||| .||||.||| ||.|.|.
BL03808 937 GGATTT--AGTTTTAAG-GCCGCATAA 960
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