Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02092 and BL03803
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_02092___yjmD.1.5803.seq
# -bsequence dna-align/BL03803___yjmD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02092___yjmD-BL03803___yjmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02092___yjmD-BL03803___yjmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02092___yjmD
# 2: BL03803___yjmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1264
# Identity: 583/1264 (46.1%)
# Similarity: 583/1264 (46.1%)
# Gaps: 491/1264 (38.8%)
# Score: 1131.5
#
#
#=======================================
BSNT_02092___ 1 ATGAAAGCGATTCAAGTGCGAAAAGCGTATGATCTGGTGA---CAGCGGA 47
|||| |.||||.
BL03803___yjm 1 ------------------------------------GTGAAAGCTGCGGT 14
BSNT_02092___ 48 GGTGAAGAAGCC--AGTTC-------TTTCA-----------------AA 71
|.|||.|||||| | ||| ||||| ||
BL03803___yjm 15 GATGACGAAGCCTTA-TTCGATTGAATTTCACGACATACCGCGTCCCGAA 63
BSNT_02092___ 72 ---------GGATGATGAAGTGCTCGTGAAAGTCAAGCGAGTCGGCATTT 112
|| ||||||.||.||.||..|.|||...|.|||.||||
BL03803___yjm 64 CCGGCCAGCGG----TGAAGTCCTTGTCAAGATAAAGGCTGCCGGGATTT 109
BSNT_02092___ 113 GCGGTTCAGACATGCACATTTATCATGGAACGAATCCGCTTGC----TAC 158
||||....||..||||..||||..|.||..|.|||||...||| |||
BL03803___yjm 110 GCGGAAGTGATGTGCATTTTTACGACGGCTCAAATCCATATGCACAGTAC 159
BSNT_02092___ 159 CCTCCCGAGAGTTATCGGACACGAGGTAACGGG---------ACAAGTGG 199
|||| ||| |..|.|||||.|||.|..|.|| |.||..||
BL03803___yjm 160 CCTC---AGA-TCTTTGGACATGAGCTTGCAGGCATCATTGAAAAAACGG 205
BSNT_02092___ 200 AGGC-------AGTTGGTGCGAATGTACAGAGCCTAAAACCCGGTGATCA 242
.||| || ||.|||| |.|..||.|.|| |||
BL03803___yjm 206 GGGCCGGCGTGAG--GGGGCGA---TCCGCAGGCGAA----CGG------ 240
BSNT_02092___ 243 TGTGGTGATTGA---GCCGATTTCTTATTGCGGATCGTGCTATGCCTGCC 289
||.||.||||| |.||||..| .||||||...|||||..|.||.|
BL03803___yjm 241 -GTCGTAATTGAACCGGCGATCCC---GTGCGGAGGCTGCTACCCTTGTC 286
BSNT_02092___ 290 GCAAAGGGCGGCCGAATGTTTGCGCCAAGCTTTCTGTATTTGGCGTACAT 339
|.||||||.||.|.|| ||| |||||| |.||||
BL03803___yjm 287 GGAAAGGGAGGACAAA------CGC--------CTGTAT-----GAACAT 317
BSNT_02092___ 340 -----------------------GAGGACGGAGGCATGCG-GGAATATAT 365
|||||.|| |.|| .||.|.|||
BL03803___yjm 318 CGATATGATCGGGTCGGTTCGCAGAGGAGGG-----TTCGCTGATTTTAT 362
BSNT_02092___ 366 TGTGCTTCCGGAAAGGCAGCTTCACGCGGT--CT---CAAA-GGACT--- 406
..|..||||.||||.|||..|.||..||.| || |||| |||.|
BL03803___yjm 363 CATTGTTCCAGAAACGCATGTCCATCCGATTCCTGAGCAAATGGATTTTG 412
BSNT_02092___ 407 -------TGCCTTGGGAGGAAGCAGTCATGGCCGAGCCTTATACGATAGG 449
|||.|||.| ||||||.|.|.|.||.||
BL03803___yjm 413 CAACCGCTGCTTTGTG----------------CGAGCCGTTTTCAATCGG 446
BSNT_02092___ 450 CGCCCAGGCAGTGTGGAGAGGCCAG--GTGGAAAAAGGTGATACCGTCCT 497
.||.|||||.||..| |.||.||| .|..|||.|||.||.||..|..|
BL03803___yjm 447 AGCGCAGGCGGTTCG--GCGGGCAGATATTCAAACAGGCGAAACGATTGT 494
BSNT_02092___ 498 GATCCAGGGAGCGGGACCCATCGGGATCTGTGTGTT---GAAAATGGC-- 542
.||...||||..|||.||.||||| ||| ||...||||
BL03803___yjm 495 CATATTGGGAATGGGTCCGATCGG---------GTTAACGATTTTGGCGC 535
BSNT_02092___ 543 ------AAAACTGGCGGGCGCT-----------------GCTGTCATGAT 569
|||| ||||| |||||| |||
BL03803___yjm 536 AGGTAAAAAA-------GCGCTTCGACGTTCGTGTGATCGCTGTC--GAT 576
BSNT_02092___ 570 ---------GACTGACTTGAACAACGATCGGCT------GGCATTTGCGA 604
||..|.||||| ||| ||||||
BL03803___yjm 577 CCTGTAAGGGAAAGGCTTGA----------GCTTGCCGAGGCATT----- 611
BSNT_02092___ 605 AAGAAAACGGCGCCGATGCTGTTGTAAATGTCCAAGC----AGAACATGT 650
|||.||.|||||.|||.| || ||| .|||.|.|.
BL03803___yjm 612 -------CGGGGCGGATGCCGTTAT-----TC--AGCCTGGTGAAGAGGA 647
BSNT_02092___ 651 TGCCGAGC----GGGTCCTTGAATG--GACTG--GGAATGAAGGAGCAAA 692
|||.|||| |..|| |||| | |||.| ||| ||||||||
BL03803___yjm 648 TGCAGAGCAAATGATTC--TGAA-GCTGACAGGCGGA--GAAGGAGC--- 689
BSNT_02092___ 693 CGTGGTCATTGATGCTGTT------TGCC----TGCCGGAGAC--TTTTG 730
||..|||| |||| .||| |.||.|.||| ||..|
BL03803___yjm 690 ---GGGGATTG----TGTTCGAAGCGGCCGGGATTCCCGCGACGATTGAG 732
BSNT_02092___ 731 CA---CTTTCAATT-GAGGCTGTGTCACCGGCGGG-ACA-TGTGGTTGT- 773
|| |.|||..|| |.||| |.|||.|||| .|| |||..||||
BL03803___yjm 733 CAATCCGTTCGTTTGGCGGC-----CGCCGCCGGGCGCATTGTCATTGTC 777
BSNT_02092___ 774 -GCTT----GGATTTGATGAAAGAG-------CGGCTCAGAT--TTCTCA 809
|||| || ||.|||.|.| |||.|| | |||||
BL03803___yjm 778 GGCTTAACGGG----GAGGAATGTGACGATTCCGGGTC---TTCTTCTC- 819
BSNT_02092___ 810 GCTGCCGATTACAAAAAAAG-------AAGTCACG----ATAACCGGATC 848
|||||.|||| ||.|.|.| |.|||
BL03803___yjm 820 ----------ACAAAGAAAGATATTGAAATTTATGGAACAAAAC------ 853
BSNT_02092___ 849 CCGATTGCAGAC-----CAATCAGTTTCCAAAAGTGGTAGAGCTTTTGAA 893
|| ||||||.|||||....||..|..|..|||||||
BL03803___yjm 854 ----------ACAGCGTCAATCAATTTCCCGGCGTCATTCAATTTTTGAA 893
BSNT_02092___ 894 TGGAGGCCGGTTAATGCATA--ACGGGCTGGTGACCCATACATTT-TCAG 940
||.|..|| .|.|| ||| .|||||| ||| |||
BL03803___yjm 894 TGAAAACC-CTGAA---ATAGCCCGGGCT-------------TTTGTCA- 925
BSNT_02092___ 941 TTGATGACGTTCATCATGCATTTCAGTTTATTAAGGAGCATCCAGATCAG 990
.||| .|||||||.|| |||.||| .|| |||..||
BL03803___yjm 926 ---CTGA----GATCATGCCTT--------TTATGGA-AAT--AGAAGAG 957
BSNT_02092___ 991 G----------TGCGAAAAGCCGT---CATCACGT--------------- 1012
| .|||||||.|.|| |||||.||
BL03803___yjm 958 GCGTTGAAAAAAGCGAAAAACTGTCCCCATCAGGTCACAAAGATCATTTT 1007
BSNT_02092___ 1013 ------TTGATTAA 1020
||||
BL03803___yjm 1008 ATCTTATTGA---- 1017
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