Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02094 and BL03802

See Amino acid alignment / Visit BSNT_02094 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence dna-align/BSNT_02094___uxuA.1.5803.seq
#    -bsequence dna-align/BL03802___uxuA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02094___uxuA-BL03802___uxuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02094___uxuA-BL03802___uxuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02094___uxuA
# 2: BL03802___uxuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity:     738/1195 (61.8%)
# Similarity:   738/1195 (61.8%)
# Gaps:         212/1195 (17.7%)
# Score: 2066.5
# 
#
#=======================================

BSNT_02094___      1 ATGAATATGACATTCCGATGGTATGGACGAGGCAACGATACAGTCACACT     50
                     |||||.|||...|||.|||||||||||..|||.|||||..|.|||||.||
BL03802___uxu      1 ATGAAAATGGTTTTCAGATGGTATGGAGAAGGAAACGACTCCGTCACCCT     50

BSNT_02094___     51 TGAACACGTGAAGCAAATTCCCGGAGTCAAAGGCATCGTTTGGGCTCTCC    100
                     |||.||..|.|.|||.||||||||.||..|.||.|||||||||||.||.|
BL03802___uxu     51 TGAGCAGATCAGGCAGATTCCCGGTGTGGAGGGAATCGTTTGGGCGCTTC    100

BSNT_02094___    101 ATCAAAAGCCTGTC-GGCGACGTGTGGGAAAAAGAAGAAAT-----CAG-    143
                     ||||..|||| |.| ||.||.|.||||..|...||||||||     .|| 
BL03802___uxu    101 ATCATCAGCC-GCCGGGTGAAGAGTGGCCATTGGAAGAAATTTTAGAAGT    149

BSNT_02094___    144 --AGCCG-AGACCGAATATATTCAATCCTATGGTTTTCATGCTGAAGTTG    190
                       |||.| ||...|||.|         ..|.||||||||...||||||||
BL03802___uxu    150 GAAGCGGCAGTGTGAACA---------GCACGGTTTTCACATTGAAGTTG    190

BSNT_02094___    191 TAGAAAGCGTGAATGTTCACGAAGCAATTAAACTTGGG-----AACGA-A    234
                     |.||||||||.||..|.||.||.|..||.||.||||||     .|||| |
BL03802___uxu    191 TTGAAAGCGTTAACATCCATGAGGATATAAAGCTTGGGCTGCCGACGAGA    240

BSNT_02094___    235 GAACGCGGCCGGTATATTGAAAACTACAAGCAAACGATCCGCAACCTT-G    283
                     ||      .|.||||||||||||.|||||||.|||||| .|.||..|| |
BL03802___uxu    241 GA------TCTGTATATTGAAAAATACAAGCGAACGAT-TGAAAATTTGG    283

BSNT_02094___    284 CCGGATTTGGCGTGAAAGTGATCTGCTATAATTTTATGCCGGTTTTTGAC    333
                     ||..|...|||||.||||||||||||||||||||||||||.||.||||||
BL03802___uxu    284 CCAAAGCCGGCGTAAAAGTGATCTGCTATAATTTTATGCCTGTATTTGAC    333

BSNT_02094___    334 TGGACACGCACGGACATGTTC----CGGCCGCTAGAAGATGGATCGACCG    379
                     |||...||.||.||..|||.|    .|||..|    |||.||.||.||||
BL03802___uxu    334 TGGCTGCGGACCGATTTGTACAAAAAGGCTCC----AGACGGTTCCACCG    379

BSNT_02094___    380 CTCTGTTTTTTGAAAAGGCCAAGGTGGAAAGCCTTGATCCTCAAGAGCT-    428
                     ||.||||.|.|||..|.||.||||||.|.|...|.||.|||...|.||| 
BL03802___uxu    380 CTTTGTTCTATGAGCACGCAAAGGTGCACACAATCGACCCTTTTGCGCTT    429

BSNT_02094___    429 ---GAT----TCGGACGGTGGAGGATGCAT-CTGACATGACACTGCCGGG    470
                        |||    |||         ..|.|||| |.||..|.||..||||.||
BL03802___uxu    430 GTCGATCAAATCG---------CCAAGCATCCCGAATTCACGATGCCCGG    470

BSNT_02094___    471 GTGGGATCCCGAAAAATTAGC----------TCGGATCAAAGAGCTTTTT    510
                     .|||||.||.|       |||          ||.|| |||  .|||.|||
BL03802___uxu    471 CTGGGAACCGG-------AGCGGCTTGAGCATCTGA-CAA--GGCTGTTT    510

BSNT_02094___    511 GCTGCCTA-CAGAACGGTCGATGAAGGA-AAGCTATGGGACAATTTATCA    558
                     |..||||| ||.||.|  .||.|.|||| .|.||.|||..|.||.| |||
BL03802___uxu    511 GAAGCCTATCAAAATG--TGACGGAGGAGGATCTGTGGAGCCATCT-TCA    557

BSNT_02094___    559 TTCTTTTTGCAGGAA---ATTCTTCC----------TGTTGCTGAGGCCT    595
                       ||.|||.|..|||   ||..||||          .|.|||.||     
BL03802___uxu    558 --CTATTTTCTTGAACGCATCATTCCAACCGCCGCACGCTGCGGA-----    600

BSNT_02094___    596 ATGGTGTTC-AAATGGCCATTCATCCGGATGACCCGCCGTGGCCGATTTT    644
                           .|| |||||||.||.|||||.|||||.||||||||||||.||||
BL03802___uxu    601 ------ATCAAAATGGCGATCCATCCCGATGATCCGCCGTGGCCGGTTTT    644

BSNT_02094___    645 CGGACTGCCGCGCATTATCA---CAGGAGAGGCAAGCTATAAGAAACTGC    691
                     ||||||.||||||||.||.|   |||||||   |||| ||         |
BL03802___uxu    645 CGGACTCCCGCGCATCATGACTTCAGGAGA---AAGC-AT---------C    681

BSNT_02094___    692 GGGC----GATATCAGAT------TCA-CCGTCTAATTGTATCACCCTTT    730
                     ||||    |.|| |||.|      ||| |||.|.|||.|..|.||.||.|
BL03802___uxu    682 GGGCGGCTGCTA-CAGCTTGTCGATCATCCGGCGAATGGCGTGACACTGT    730

BSNT_02094___    731 GCACAGGTTCAATGGGAGCCAATCCCGCTAA---------CGACATGGTG    771
                     |||..||||||.||||.|||||.||||..||         ||.|||    
BL03802___uxu    731 GCAGCGGTTCATTGGGCGCCAACCCCGAAAATGATATTTCCGCCAT----    776

BSNT_02094___    772 GAGATCGCTAAAACGTATGCCG---GCATCGCTCCATTTTCACATATTCG    818
                       ||||   .|..|||||||||   |.||   |||||||.|.|||||.||
BL03802___uxu    777 --GATC---CATGCGTATGCCGACCGGAT---TCCATTTGCCCATATCCG    818

BSNT_02094___    819 CAATGTGAAAATTTATGAGAATGGCGATTTTATTGAAACATCTCATTTAA    868
                     .||.||.|||.|.||.||.||.|||||||||||.||||||||.||...||
BL03802___uxu    819 AAACGTCAAAGTCTACGAAAACGGCGATTTTATCGAAACATCGCACAGAA    868

BSNT_02094___    869 CAAAGGATGGTTCGATCAACATTCAAGGCGTGATGG---AAGAACT-GCA    914
                     ||||.|||||..|..|..|||||   .|||.|||.|   ||| .|| .||
BL03802___uxu    869 CAAAAGATGGCACAGTTGACATT---TGCGGGATTGTCAAAG-CCTATCA    914

BSNT_02094___    915 T-AAGCAGG-ATTACGAAGGATATGTCAGACCGGATCATGGGCGCCATCT    962
                     | ||.|||| .||.|  |||.|||||..|.||||||||.||.|||||..|
BL03802___uxu    915 TGAAACAGGTTTTTC--AGGCTATGTGCGTCCGGATCACGGCCGCCACAT    962

BSNT_02094___    963 TTGGGGCGAGCAATGCCGCCCGGGATATGGCTTATACGATCGGGCACTTG   1012
                     |||||..||..|.|||.|.||.||.||.||..|.||.||..||||.||.|
BL03802___uxu    963 TTGGGATGAAAAGTGCAGGCCCGGCTACGGTCTGTATGACAGGGCGCTCG   1012

BSNT_02094___   1013 GCATCATGTATTTGAACGGGC-TGTGGGA--CGCCTATGAAGCAATGGCA   1059
                     |.||||||||||| |..|||| |.|||||  |||       .||||.| |
BL03802___uxu   1013 GTATCATGTATTT-ATGGGGCATATGGGATTCGC-------TCAATAG-A   1053

BSNT_02094___   1060 AAAAAAGAGGTGG---------GCGT-------ATGA--------   1080
                     .|||||.|||.||         ||.|       ||||        
BL03802___uxu   1054 GAAAAACAGGAGGCTTCAAAATGCTTGAAATCCATGAAAATTTAG   1098


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