Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02094 and BL03802
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_02094___uxuA.1.5803.seq
# -bsequence dna-align/BL03802___uxuA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02094___uxuA-BL03802___uxuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02094___uxuA-BL03802___uxuA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02094___uxuA
# 2: BL03802___uxuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1195
# Identity: 738/1195 (61.8%)
# Similarity: 738/1195 (61.8%)
# Gaps: 212/1195 (17.7%)
# Score: 2066.5
#
#
#=======================================
BSNT_02094___ 1 ATGAATATGACATTCCGATGGTATGGACGAGGCAACGATACAGTCACACT 50
|||||.|||...|||.|||||||||||..|||.|||||..|.|||||.||
BL03802___uxu 1 ATGAAAATGGTTTTCAGATGGTATGGAGAAGGAAACGACTCCGTCACCCT 50
BSNT_02094___ 51 TGAACACGTGAAGCAAATTCCCGGAGTCAAAGGCATCGTTTGGGCTCTCC 100
|||.||..|.|.|||.||||||||.||..|.||.|||||||||||.||.|
BL03802___uxu 51 TGAGCAGATCAGGCAGATTCCCGGTGTGGAGGGAATCGTTTGGGCGCTTC 100
BSNT_02094___ 101 ATCAAAAGCCTGTC-GGCGACGTGTGGGAAAAAGAAGAAAT-----CAG- 143
||||..|||| |.| ||.||.|.||||..|...|||||||| .||
BL03802___uxu 101 ATCATCAGCC-GCCGGGTGAAGAGTGGCCATTGGAAGAAATTTTAGAAGT 149
BSNT_02094___ 144 --AGCCG-AGACCGAATATATTCAATCCTATGGTTTTCATGCTGAAGTTG 190
|||.| ||...|||.| ..|.||||||||...||||||||
BL03802___uxu 150 GAAGCGGCAGTGTGAACA---------GCACGGTTTTCACATTGAAGTTG 190
BSNT_02094___ 191 TAGAAAGCGTGAATGTTCACGAAGCAATTAAACTTGGG-----AACGA-A 234
|.||||||||.||..|.||.||.|..||.||.|||||| .|||| |
BL03802___uxu 191 TTGAAAGCGTTAACATCCATGAGGATATAAAGCTTGGGCTGCCGACGAGA 240
BSNT_02094___ 235 GAACGCGGCCGGTATATTGAAAACTACAAGCAAACGATCCGCAACCTT-G 283
|| .|.||||||||||||.|||||||.|||||| .|.||..|| |
BL03802___uxu 241 GA------TCTGTATATTGAAAAATACAAGCGAACGAT-TGAAAATTTGG 283
BSNT_02094___ 284 CCGGATTTGGCGTGAAAGTGATCTGCTATAATTTTATGCCGGTTTTTGAC 333
||..|...|||||.||||||||||||||||||||||||||.||.||||||
BL03802___uxu 284 CCAAAGCCGGCGTAAAAGTGATCTGCTATAATTTTATGCCTGTATTTGAC 333
BSNT_02094___ 334 TGGACACGCACGGACATGTTC----CGGCCGCTAGAAGATGGATCGACCG 379
|||...||.||.||..|||.| .|||..| |||.||.||.||||
BL03802___uxu 334 TGGCTGCGGACCGATTTGTACAAAAAGGCTCC----AGACGGTTCCACCG 379
BSNT_02094___ 380 CTCTGTTTTTTGAAAAGGCCAAGGTGGAAAGCCTTGATCCTCAAGAGCT- 428
||.||||.|.|||..|.||.||||||.|.|...|.||.|||...|.|||
BL03802___uxu 380 CTTTGTTCTATGAGCACGCAAAGGTGCACACAATCGACCCTTTTGCGCTT 429
BSNT_02094___ 429 ---GAT----TCGGACGGTGGAGGATGCAT-CTGACATGACACTGCCGGG 470
||| ||| ..|.|||| |.||..|.||..||||.||
BL03802___uxu 430 GTCGATCAAATCG---------CCAAGCATCCCGAATTCACGATGCCCGG 470
BSNT_02094___ 471 GTGGGATCCCGAAAAATTAGC----------TCGGATCAAAGAGCTTTTT 510
.|||||.||.| ||| ||.|| ||| .|||.|||
BL03802___uxu 471 CTGGGAACCGG-------AGCGGCTTGAGCATCTGA-CAA--GGCTGTTT 510
BSNT_02094___ 511 GCTGCCTA-CAGAACGGTCGATGAAGGA-AAGCTATGGGACAATTTATCA 558
|..||||| ||.||.| .||.|.|||| .|.||.|||..|.||.| |||
BL03802___uxu 511 GAAGCCTATCAAAATG--TGACGGAGGAGGATCTGTGGAGCCATCT-TCA 557
BSNT_02094___ 559 TTCTTTTTGCAGGAA---ATTCTTCC----------TGTTGCTGAGGCCT 595
||.|||.|..||| ||..|||| .|.|||.||
BL03802___uxu 558 --CTATTTTCTTGAACGCATCATTCCAACCGCCGCACGCTGCGGA----- 600
BSNT_02094___ 596 ATGGTGTTC-AAATGGCCATTCATCCGGATGACCCGCCGTGGCCGATTTT 644
.|| |||||||.||.|||||.|||||.||||||||||||.||||
BL03802___uxu 601 ------ATCAAAATGGCGATCCATCCCGATGATCCGCCGTGGCCGGTTTT 644
BSNT_02094___ 645 CGGACTGCCGCGCATTATCA---CAGGAGAGGCAAGCTATAAGAAACTGC 691
||||||.||||||||.||.| ||||||| |||| || |
BL03802___uxu 645 CGGACTCCCGCGCATCATGACTTCAGGAGA---AAGC-AT---------C 681
BSNT_02094___ 692 GGGC----GATATCAGAT------TCA-CCGTCTAATTGTATCACCCTTT 730
|||| |.|| |||.| ||| |||.|.|||.|..|.||.||.|
BL03802___uxu 682 GGGCGGCTGCTA-CAGCTTGTCGATCATCCGGCGAATGGCGTGACACTGT 730
BSNT_02094___ 731 GCACAGGTTCAATGGGAGCCAATCCCGCTAA---------CGACATGGTG 771
|||..||||||.||||.|||||.||||..|| ||.|||
BL03802___uxu 731 GCAGCGGTTCATTGGGCGCCAACCCCGAAAATGATATTTCCGCCAT---- 776
BSNT_02094___ 772 GAGATCGCTAAAACGTATGCCG---GCATCGCTCCATTTTCACATATTCG 818
|||| .|..||||||||| |.|| |||||||.|.|||||.||
BL03802___uxu 777 --GATC---CATGCGTATGCCGACCGGAT---TCCATTTGCCCATATCCG 818
BSNT_02094___ 819 CAATGTGAAAATTTATGAGAATGGCGATTTTATTGAAACATCTCATTTAA 868
.||.||.|||.|.||.||.||.|||||||||||.||||||||.||...||
BL03802___uxu 819 AAACGTCAAAGTCTACGAAAACGGCGATTTTATCGAAACATCGCACAGAA 868
BSNT_02094___ 869 CAAAGGATGGTTCGATCAACATTCAAGGCGTGATGG---AAGAACT-GCA 914
||||.|||||..|..|..||||| .|||.|||.| ||| .|| .||
BL03802___uxu 869 CAAAAGATGGCACAGTTGACATT---TGCGGGATTGTCAAAG-CCTATCA 914
BSNT_02094___ 915 T-AAGCAGG-ATTACGAAGGATATGTCAGACCGGATCATGGGCGCCATCT 962
| ||.|||| .||.| |||.|||||..|.||||||||.||.|||||..|
BL03802___uxu 915 TGAAACAGGTTTTTC--AGGCTATGTGCGTCCGGATCACGGCCGCCACAT 962
BSNT_02094___ 963 TTGGGGCGAGCAATGCCGCCCGGGATATGGCTTATACGATCGGGCACTTG 1012
|||||..||..|.|||.|.||.||.||.||..|.||.||..||||.||.|
BL03802___uxu 963 TTGGGATGAAAAGTGCAGGCCCGGCTACGGTCTGTATGACAGGGCGCTCG 1012
BSNT_02094___ 1013 GCATCATGTATTTGAACGGGC-TGTGGGA--CGCCTATGAAGCAATGGCA 1059
|.||||||||||| |..|||| |.||||| ||| .||||.| |
BL03802___uxu 1013 GTATCATGTATTT-ATGGGGCATATGGGATTCGC-------TCAATAG-A 1053
BSNT_02094___ 1060 AAAAAAGAGGTGG---------GCGT-------ATGA-------- 1080
.|||||.|||.|| ||.| ||||
BL03802___uxu 1054 GAAAAACAGGAGGCTTCAAAATGCTTGAAATCCATGAAAATTTAG 1098
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