Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01180 and BL03796
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01180___yesM.1.5803.seq
# -bsequence dna-align/BL03796___yesM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01180___yesM-BL03796___yesM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01180___yesM-BL03796___yesM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01180___yesM
# 2: BL03796___yesM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1909
# Identity: 1166/1909 (61.1%)
# Similarity: 1166/1909 (61.1%)
# Gaps: 347/1909 (18.2%)
# Score: 3160.5
#
#
#=======================================
BSNT_01180___ 1 ATGAAGAAAAGAGTTGCTGGCTGGTA-CAGGCGGATGAAGATTAAGGATA 49
.|||| |.|||| || ||...|.||.|||||.|||.
BL03796___yes 1 GTGAA---------------CCGGTATCA-GCATTTAAAAATTAAAGATC 34
BSNT_01180___ 50 AGCTGTTTGTGTTTCTATCGTTGATTATGGCCGTATC---CTTTCTG--T 94
|..|||||.|.||..|.||..||||.||||||||.|| |.|.||| .
BL03796___yes 35 AATTGTTTATTTTGATTTCACTGATCATGGCCGTTTCGCTCATCCTGATC 84
BSNT_01180___ 95 TTGTATACAGCGGGGTCCAGTATGCCTTTCATGTGTATGATGAGCAGATT 144
||| |||||..|.||.||.||.||.|..||.|||||..||||||||
BL03796___yes 85 TTG-----AGCGGCATTCAATACGCGTTCCGGGTATATGACCAGCAGATT 129
BSNT_01180___ 145 TACCGCAAGTCCTCGGAGGTGCTTCGGATG---TCTTCTGAAAGGATCGA 191
|||.|.|||||.||..||||||| |||| ||.||..||||.||.||
BL03796___yes 130 TACAGGAAGTCGTCACAGGTGCT---GATGCTATCATCAAAAAGCATTGA 176
BSNT_01180___ 192 AGACGAGCTGAAGAAGATAGAGGATGTGTCATATGAAATCATTACAGACG 241
|||.||..||||.|||||.|||||||||||||||.||||||..||.||||
BL03796___yes 177 AGATGAATTGAAAAAGATTGAGGATGTGTCATATCAAATCACCACTGACG 226
BSNT_01180___ 242 AACAGATTC-AGCG--CATCCTGAGTATGC---------------AAAAT 273
.|.|.||.| |||| |.|||||| |.|| .||||
BL03796___yes 227 CAGACATCCAAGCGAACCTCCTGA--AAGCCGGCCGCGGCCAGAACAAAT 274
BSNT_01180___ 274 CGGGATGATA-CGTATGATCAATATCAAATGAAGCAGGAGCTGTGGGATC 322
..|||.|.|| || |||.||.|.|||| .|.||||||.
BL03796___yes 275 ACGGACGCTACCG---GATAAAAAGCAAA-----------ATTTGGGATA 310
BSNT_01180___ 323 AGCTTGCGGGATATGCC-------AGCGATGAAAAGTACATCGATTCCAT 365
||||.||.|.||||.|| |||| ||||||..|.||.||
BL03796___yes 311 AGCTGGCCGAATATACCGGCTCTAAGCG-------GTACATTAAATCGAT 353
BSNT_01180___ 366 TCATGTGATTGATGCCCGCGGCTCAGAGTATTCAGCCG----GAAACAGT 411
||||.||.|||||||...||||.|.|||||.||.||.| |||
BL03796___yes 354 TCATTTGTTTGATGCTTCCGGCACCGAGTACTCCGCAGGGGCGAA----- 398
BSNT_01180___ 412 TCTTCAGATCTTTT-------GCA--GCAGGAGCAGGAAGAGGTATGTAA 452
||| ||| ||.|||||| .|||| |||.|
BL03796___yes 399 -----------TTTAACCGAAGCATTGCGGGAGCA-AAAGA---ATGCA- 432
BSNT_01180___ 453 GC-GAGCGAAA---------GCGAAAAATGGAAGAAATCTTTGGATGACG 492
| ||.||||| ||.||||| ||.||.||..|.||| || |
BL03796___yes 433 -CTGATCGAAAAAGCGTCGCGCCAAAAA-GGCAGCAACATGTGG--GA-G 477
BSNT_01180___ 493 CTC--GGCGGGTCAGATCCTGTC---CTGATTTCAGCACGGCAGATCAGG 537
|.| |.||||| ||..|.|.| |||.|.||.|..|||.|.|||.|.
BL03796___yes 478 CCCATGCCGGGT--GAAACCGGCGAGCTGTTATCCGTCCGGGAAATCCGC 525
BSNT_01180___ 538 TCCTGTCACCAGCTGAGTTTGAACGGCT--------TGGGCATGGTGCTG 579
||||.|.| |.||||.||| || ||||.|..|||.||
BL03796___yes 526 TCCTATGA------GCGTTTAAAC--CTTGACCACCTGGGAACAGTGGTG 567
BSNT_01180___ 580 ATCCAGGTCAATGTAAAACAGATGATTCGTGATGTGCCGAAGGATTGGGG 629
||....|.|.||.||||||.|.||||..|.|||.|.|||||.||.|||||
BL03796___yes 568 ATTGTCGCCGATTTAAAACGGGTGATCGGCGATCTTCCGAAAGACTGGGG 617
BSNT_01180___ 630 CGATTCAGTCGGAGACATTATGATTGC--TGACCAA--GGCGGTAATTTG 675
.|| ||.||..|.| |.|||||| ||.|..| ||||| .|..||
BL03796___yes 618 GGA---AGGCGCGGGC---AAGATTGCGATGTCGGACGGGCGG-GAGCTG 660
BSNT_01180___ 676 GTGTATACGGCACATGC--ATCAGCGCA-----------------TGT-T 705
.|.|.|.|.| |.|||| .||||| || ||| |
BL03796___yes 661 TTTTTTTCTG-AAATGCCTTTCAGC-CAAACCGATGGCCTCCGATTGTCT 708
BSNT_01180___ 706 CCTGAGGCAGCAAAAGAGACGCTGAAGCACCCCGGTTATGAC-TTGATAA 754
.||.|.||.|.||| |||.|||||| ||| |..
BL03796___yes 709 TCTCATGCTGAAAA------------------CGGATATGACATTG-TGG 739
BSNT_01180___ 755 AAAAGAATGGCAAACGTTACTTTATTTCTTACCTTCAATCATCCTATCAA 804
|..|.||.|||.|.||.|..||..||||.||..|..|||||.|.|||.|.
BL03796___yes 740 AGGAAAACGGCCAGCGGTTTTTCGTTTCATATGTCAAATCAGCGTATAAG 789
BSNT_01180___ 805 AATTGGAGCTACTATAACGTCATCCCCTTTGATCAGATGTTCGCGAAAAT 854
|||||||..||.|..|.|.|.|||||||||||....|||||..|||||||
BL03796___yes 790 AATTGGACATATTGGAGCCTGATCCCCTTTGACGCTATGTTTTCGAAAAT 839
BSNT_01180___ 855 TTCCTTTATGAAAACAGTGATCGGCACATGCTTTC-----TTCTC----T 895
|||....|||||.|| ||| |.||.|||| ||.|| |
BL03796___yes 840 TTCTGCGATGAAGAC---GAT-----CCTGATTTCCCTTTTTATCCTTTT 881
BSNT_01180___ 896 TTTTCTG--TGTGGTTTTGCTTTTCGGAAGGAAAATCGCCAACAGCATCA 943
||||||| ||.|||| ||.||.|||||.|||||.||||...||||.|
BL03796___yes 882 TTTTCTGATTGCGGTT---CTCTTTGGAAGAAAAATGGCCAGGGGCATTA 928
BSNT_01180___ 944 CGGAG-CCGATTGAACAGCTTGTGACCGCGATGAAATCGGTGCAGCACAG 992
| ||| ||||||||..||||.|||.|.||.||||||...||.||..||.|
BL03796___yes 929 C-GAGCCCGATTGAGAAGCTGGTGGCGGCCATGAAAAATGTCCAAAACGG 977
BSNT_01180___ 993 CGGCA-TTGAAGCAGGTGTGTCGCTTTCTCTG------------CCGGAA 1029
|| | ||.||.|.| |.|.||||..||| | ||||
BL03796___yes 978 CG--ATTTTAAACTG--GCGCCGCTCACTC-GCGCTCCTTTAGACCGG-- 1020
BSNT_01180___ 1030 CATACACAGGATGAGGCCGGCATGCTGAACCGCCAT---TTTACTGTCAT 1076
||||||||.|.|.||.|..|.||||||.|| ||||| .||
BL03796___yes 1021 ------CAGGATGAAGTCAGCGTCTTAAACCGCAATTTCTTTAC---AAT 1061
BSNT_01180___ 1077 GATGAAACGGATTAATGAGCTGATGGAAGAAAATGTGGAA-AAACAGCTC 1125
|.|..|||||||.|||||.|||||.|..||.|| .|..|| ||.|||||.
BL03796___yes 1062 GGTTGAACGGATCAATGAACTGATTGCCGAGAA-CTACAAGAAGCAGCTG 1110
BSNT_01180___ 1126 ATTATTAAAGAAACCGAATTGAAAGCACTGCAAGCCCAGATTAACCCGCA 1175
||..|.|||||.||.|||||.|||||.||.|||||.||.||.|||||.||
BL03796___yes 1111 ATGCTGAAAGAGACGGAATTCAAAGCGCTTCAAGCGCAAATCAACCCCCA 1160
BSNT_01180___ 1176 TTTTTTATATAACACGCTCGAGTCCATCAATTGGCTGGCCAAGGCGAATC 1225
.||||||||.||||||||||||||.|||||.|||||.||.||..||||.|
BL03796___yes 1161 CTTTTTATACAACACGCTCGAGTCGATCAACTGGCTTGCAAAAACGAACC 1210
BSNT_01180___ 1226 AGCAAAAGCAAATCTCAAAAATGGTGGAATCGCTCGGTTTTCTTCTGCGA 1275
.|||...||||||.|||||.|||..||||||.||.||.|||.|.||..||
BL03796___yes 1211 GGCAGCCGCAAATTTCAAAGATGACGGAATCTCTAGGGTTTTTGCTCAGA 1260
BSNT_01180___ 1276 AACAGCATACATATGAAAAAGGATATCGTGACCATTCAGGAGGAGGCGGA 1325
||...|||..|||||||||..||..|..||||.||..||||.||.||.||
BL03796___yes 1261 AATGCCATCAATATGAAAACCGACGTGCTGACGATCGAGGAAGAAGCTGA 1310
BSNT_01180___ 1326 CATTGTACGTCACTATATGACTATTCAGCGATTTCGATTTGAAGAGCGCC 1375
.||.||.||.||||||.|.||.||||||||.|||||.|||||.|||||.|
BL03796___yes 1311 AATCGTGCGCCACTATTTTACGATTCAGCGGTTTCGCTTTGAGGAGCGGC 1360
BSNT_01180___ 1376 T-GAATTTCACGTTGGATATTGA--CGATGAGGTGAAGCATTGCCTCATT 1422
| |..|||.| |.|.||.||||| || |..|||||..|.||||.|.|.
BL03796___yes 1361 TCGTTTTTGA-GCTCGACATTGAGCCG--GCTGTGAAAAAATGCCGCGTA 1407
BSNT_01180___ 1423 CCGAAACTGACGCTCCAGCCGCTTGCGGAAAATGCGATTCAATA-CGCGC 1471
||.||.||....||||||||..|.||.|||||.||||||..||| .|| |
BL03796___yes 1408 CCTAAGCTTGTTCTCCAGCCTTTGGCTGAAAACGCGATTACATATTGC-C 1456
BSNT_01180___ 1472 TTGAACCCTTTACAAGG--CCATGCGCCATCCGGATTCAGGCGAA----- 1514
||||.||||| ||..| ||.| ||||| ||||| ||
BL03796___yes 1457 TTGAGCCCTT--CATTGAACCTT--GCCAT----ATTCA----AATCAAA 1494
BSNT_01180___ 1515 ------AAAGACGAAGGGCTGTGTTTGTATTACGGTCGAAGATAACGGCC 1558
|||.|.||||.||| |||.|.|.|.|||||.|..||.|||||||
BL03796___yes 1495 GCATATAAAAAAGAAGAGCT-TGTCTATTTAACGGTTGCCGACAACGGCC 1543
BSNT_01180___ 1559 CTGGCATGGATG--GACGGATTCTTGAATCAA------------------ 1588
|.|||||||||| ||| ||.|||.| ||
BL03796___yes 1544 CCGGCATGGATGAAGAC---TTTTTGGA--AAAGGCGAGAAAGGAGCTTG 1588
BSNT_01180___ 1589 --CGGA----CGGAAGAGGAATCGGCCTGTGGAATATTCG-CGAGCGCA- 1630
|||| |||.|||||||||||.|||...|||| ||| ||||||||
BL03796___yes 1589 TCCGGACAACCGGGAGAGGAATCGGGCTGCAAAATA-TCGACGAGCGCAT 1637
BSNT_01180___ 1631 TCAGCCTGACATTCGG---AGAGCCATACGGCTTG-CGGATTCAGAGTGA 1676
|||| ||||..||.|| ||.| ||.|||||| ||..|||| ||.||
BL03796___yes 1638 TCAG-CTGATGTTTGGCAAAGGG---TATGGCTTGACGATTTCA-AGCGA 1682
BSNT_01180___ 1677 GCATGAA-AAGGGAACGAGGATTGTGATCACAATACCGTGCCGAAATGAG 1725
.|.||| ||||||||...|||..||||.|.||||||.|..| ||.|.|
BL03796___yes 1683 -AAAGAATAAGGGAACCGTGATGATGATTAAAATACCATTTC--AAAGCG 1729
BSNT_01180___ 1726 GTGGTGTGA 1734
| |||||||
BL03796___yes 1730 G-GGTGTGA 1737
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