Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01180 and BL03796

See Amino acid alignment / Visit BSNT_01180 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence dna-align/BSNT_01180___yesM.1.5803.seq
#    -bsequence dna-align/BL03796___yesM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01180___yesM-BL03796___yesM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01180___yesM-BL03796___yesM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01180___yesM
# 2: BL03796___yesM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1909
# Identity:    1166/1909 (61.1%)
# Similarity:  1166/1909 (61.1%)
# Gaps:         347/1909 (18.2%)
# Score: 3160.5
# 
#
#=======================================

BSNT_01180___      1 ATGAAGAAAAGAGTTGCTGGCTGGTA-CAGGCGGATGAAGATTAAGGATA     49
                     .||||               |.|||| || ||...|.||.|||||.|||.
BL03796___yes      1 GTGAA---------------CCGGTATCA-GCATTTAAAAATTAAAGATC     34

BSNT_01180___     50 AGCTGTTTGTGTTTCTATCGTTGATTATGGCCGTATC---CTTTCTG--T     94
                     |..|||||.|.||..|.||..||||.||||||||.||   |.|.|||  .
BL03796___yes     35 AATTGTTTATTTTGATTTCACTGATCATGGCCGTTTCGCTCATCCTGATC     84

BSNT_01180___     95 TTGTATACAGCGGGGTCCAGTATGCCTTTCATGTGTATGATGAGCAGATT    144
                     |||     |||||..|.||.||.||.||.|..||.|||||..||||||||
BL03796___yes     85 TTG-----AGCGGCATTCAATACGCGTTCCGGGTATATGACCAGCAGATT    129

BSNT_01180___    145 TACCGCAAGTCCTCGGAGGTGCTTCGGATG---TCTTCTGAAAGGATCGA    191
                     |||.|.|||||.||..|||||||   ||||   ||.||..||||.||.||
BL03796___yes    130 TACAGGAAGTCGTCACAGGTGCT---GATGCTATCATCAAAAAGCATTGA    176

BSNT_01180___    192 AGACGAGCTGAAGAAGATAGAGGATGTGTCATATGAAATCATTACAGACG    241
                     |||.||..||||.|||||.|||||||||||||||.||||||..||.||||
BL03796___yes    177 AGATGAATTGAAAAAGATTGAGGATGTGTCATATCAAATCACCACTGACG    226

BSNT_01180___    242 AACAGATTC-AGCG--CATCCTGAGTATGC---------------AAAAT    273
                     .|.|.||.| ||||  |.||||||  |.||               .||||
BL03796___yes    227 CAGACATCCAAGCGAACCTCCTGA--AAGCCGGCCGCGGCCAGAACAAAT    274

BSNT_01180___    274 CGGGATGATA-CGTATGATCAATATCAAATGAAGCAGGAGCTGTGGGATC    322
                     ..|||.|.|| ||   |||.||.|.||||           .|.||||||.
BL03796___yes    275 ACGGACGCTACCG---GATAAAAAGCAAA-----------ATTTGGGATA    310

BSNT_01180___    323 AGCTTGCGGGATATGCC-------AGCGATGAAAAGTACATCGATTCCAT    365
                     ||||.||.|.||||.||       ||||       ||||||..|.||.||
BL03796___yes    311 AGCTGGCCGAATATACCGGCTCTAAGCG-------GTACATTAAATCGAT    353

BSNT_01180___    366 TCATGTGATTGATGCCCGCGGCTCAGAGTATTCAGCCG----GAAACAGT    411
                     ||||.||.|||||||...||||.|.|||||.||.||.|    |||     
BL03796___yes    354 TCATTTGTTTGATGCTTCCGGCACCGAGTACTCCGCAGGGGCGAA-----    398

BSNT_01180___    412 TCTTCAGATCTTTT-------GCA--GCAGGAGCAGGAAGAGGTATGTAA    452
                                |||       |||  ||.|||||| .||||   |||.| 
BL03796___yes    399 -----------TTTAACCGAAGCATTGCGGGAGCA-AAAGA---ATGCA-    432

BSNT_01180___    453 GC-GAGCGAAA---------GCGAAAAATGGAAGAAATCTTTGGATGACG    492
                      | ||.|||||         ||.||||| ||.||.||..|.|||  || |
BL03796___yes    433 -CTGATCGAAAAAGCGTCGCGCCAAAAA-GGCAGCAACATGTGG--GA-G    477

BSNT_01180___    493 CTC--GGCGGGTCAGATCCTGTC---CTGATTTCAGCACGGCAGATCAGG    537
                     |.|  |.|||||  ||..|.|.|   |||.|.||.|..|||.|.|||.|.
BL03796___yes    478 CCCATGCCGGGT--GAAACCGGCGAGCTGTTATCCGTCCGGGAAATCCGC    525

BSNT_01180___    538 TCCTGTCACCAGCTGAGTTTGAACGGCT--------TGGGCATGGTGCTG    579
                     ||||.|.|      |.||||.|||  ||        ||||.|..|||.||
BL03796___yes    526 TCCTATGA------GCGTTTAAAC--CTTGACCACCTGGGAACAGTGGTG    567

BSNT_01180___    580 ATCCAGGTCAATGTAAAACAGATGATTCGTGATGTGCCGAAGGATTGGGG    629
                     ||....|.|.||.||||||.|.||||..|.|||.|.|||||.||.|||||
BL03796___yes    568 ATTGTCGCCGATTTAAAACGGGTGATCGGCGATCTTCCGAAAGACTGGGG    617

BSNT_01180___    630 CGATTCAGTCGGAGACATTATGATTGC--TGACCAA--GGCGGTAATTTG    675
                     .||   ||.||..|.|   |.||||||  ||.|..|  ||||| .|..||
BL03796___yes    618 GGA---AGGCGCGGGC---AAGATTGCGATGTCGGACGGGCGG-GAGCTG    660

BSNT_01180___    676 GTGTATACGGCACATGC--ATCAGCGCA-----------------TGT-T    705
                     .|.|.|.|.| |.||||  .||||| ||                 ||| |
BL03796___yes    661 TTTTTTTCTG-AAATGCCTTTCAGC-CAAACCGATGGCCTCCGATTGTCT    708

BSNT_01180___    706 CCTGAGGCAGCAAAAGAGACGCTGAAGCACCCCGGTTATGAC-TTGATAA    754
                     .||.|.||.|.|||                  |||.|||||| ||| |..
BL03796___yes    709 TCTCATGCTGAAAA------------------CGGATATGACATTG-TGG    739

BSNT_01180___    755 AAAAGAATGGCAAACGTTACTTTATTTCTTACCTTCAATCATCCTATCAA    804
                     |..|.||.|||.|.||.|..||..||||.||..|..|||||.|.|||.|.
BL03796___yes    740 AGGAAAACGGCCAGCGGTTTTTCGTTTCATATGTCAAATCAGCGTATAAG    789

BSNT_01180___    805 AATTGGAGCTACTATAACGTCATCCCCTTTGATCAGATGTTCGCGAAAAT    854
                     |||||||..||.|..|.|.|.|||||||||||....|||||..|||||||
BL03796___yes    790 AATTGGACATATTGGAGCCTGATCCCCTTTGACGCTATGTTTTCGAAAAT    839

BSNT_01180___    855 TTCCTTTATGAAAACAGTGATCGGCACATGCTTTC-----TTCTC----T    895
                     |||....|||||.||   |||     |.||.||||     ||.||    |
BL03796___yes    840 TTCTGCGATGAAGAC---GAT-----CCTGATTTCCCTTTTTATCCTTTT    881

BSNT_01180___    896 TTTTCTG--TGTGGTTTTGCTTTTCGGAAGGAAAATCGCCAACAGCATCA    943
                     |||||||  ||.||||   ||.||.|||||.|||||.||||...||||.|
BL03796___yes    882 TTTTCTGATTGCGGTT---CTCTTTGGAAGAAAAATGGCCAGGGGCATTA    928

BSNT_01180___    944 CGGAG-CCGATTGAACAGCTTGTGACCGCGATGAAATCGGTGCAGCACAG    992
                     | ||| ||||||||..||||.|||.|.||.||||||...||.||..||.|
BL03796___yes    929 C-GAGCCCGATTGAGAAGCTGGTGGCGGCCATGAAAAATGTCCAAAACGG    977

BSNT_01180___    993 CGGCA-TTGAAGCAGGTGTGTCGCTTTCTCTG------------CCGGAA   1029
                     ||  | ||.||.|.|  |.|.||||..||| |            ||||  
BL03796___yes    978 CG--ATTTTAAACTG--GCGCCGCTCACTC-GCGCTCCTTTAGACCGG--   1020

BSNT_01180___   1030 CATACACAGGATGAGGCCGGCATGCTGAACCGCCAT---TTTACTGTCAT   1076
                           ||||||||.|.|.||.|..|.||||||.||   |||||   .||
BL03796___yes   1021 ------CAGGATGAAGTCAGCGTCTTAAACCGCAATTTCTTTAC---AAT   1061

BSNT_01180___   1077 GATGAAACGGATTAATGAGCTGATGGAAGAAAATGTGGAA-AAACAGCTC   1125
                     |.|..|||||||.|||||.|||||.|..||.|| .|..|| ||.|||||.
BL03796___yes   1062 GGTTGAACGGATCAATGAACTGATTGCCGAGAA-CTACAAGAAGCAGCTG   1110

BSNT_01180___   1126 ATTATTAAAGAAACCGAATTGAAAGCACTGCAAGCCCAGATTAACCCGCA   1175
                     ||..|.|||||.||.|||||.|||||.||.|||||.||.||.|||||.||
BL03796___yes   1111 ATGCTGAAAGAGACGGAATTCAAAGCGCTTCAAGCGCAAATCAACCCCCA   1160

BSNT_01180___   1176 TTTTTTATATAACACGCTCGAGTCCATCAATTGGCTGGCCAAGGCGAATC   1225
                     .||||||||.||||||||||||||.|||||.|||||.||.||..||||.|
BL03796___yes   1161 CTTTTTATACAACACGCTCGAGTCGATCAACTGGCTTGCAAAAACGAACC   1210

BSNT_01180___   1226 AGCAAAAGCAAATCTCAAAAATGGTGGAATCGCTCGGTTTTCTTCTGCGA   1275
                     .|||...||||||.|||||.|||..||||||.||.||.|||.|.||..||
BL03796___yes   1211 GGCAGCCGCAAATTTCAAAGATGACGGAATCTCTAGGGTTTTTGCTCAGA   1260

BSNT_01180___   1276 AACAGCATACATATGAAAAAGGATATCGTGACCATTCAGGAGGAGGCGGA   1325
                     ||...|||..|||||||||..||..|..||||.||..||||.||.||.||
BL03796___yes   1261 AATGCCATCAATATGAAAACCGACGTGCTGACGATCGAGGAAGAAGCTGA   1310

BSNT_01180___   1326 CATTGTACGTCACTATATGACTATTCAGCGATTTCGATTTGAAGAGCGCC   1375
                     .||.||.||.||||||.|.||.||||||||.|||||.|||||.|||||.|
BL03796___yes   1311 AATCGTGCGCCACTATTTTACGATTCAGCGGTTTCGCTTTGAGGAGCGGC   1360

BSNT_01180___   1376 T-GAATTTCACGTTGGATATTGA--CGATGAGGTGAAGCATTGCCTCATT   1422
                     | |..|||.| |.|.||.|||||  ||  |..|||||..|.||||.|.|.
BL03796___yes   1361 TCGTTTTTGA-GCTCGACATTGAGCCG--GCTGTGAAAAAATGCCGCGTA   1407

BSNT_01180___   1423 CCGAAACTGACGCTCCAGCCGCTTGCGGAAAATGCGATTCAATA-CGCGC   1471
                     ||.||.||....||||||||..|.||.|||||.||||||..||| .|| |
BL03796___yes   1408 CCTAAGCTTGTTCTCCAGCCTTTGGCTGAAAACGCGATTACATATTGC-C   1456

BSNT_01180___   1472 TTGAACCCTTTACAAGG--CCATGCGCCATCCGGATTCAGGCGAA-----   1514
                     ||||.|||||  ||..|  ||.|  |||||    |||||    ||     
BL03796___yes   1457 TTGAGCCCTT--CATTGAACCTT--GCCAT----ATTCA----AATCAAA   1494

BSNT_01180___   1515 ------AAAGACGAAGGGCTGTGTTTGTATTACGGTCGAAGATAACGGCC   1558
                           |||.|.||||.||| |||.|.|.|.|||||.|..||.|||||||
BL03796___yes   1495 GCATATAAAAAAGAAGAGCT-TGTCTATTTAACGGTTGCCGACAACGGCC   1543

BSNT_01180___   1559 CTGGCATGGATG--GACGGATTCTTGAATCAA------------------   1588
                     |.||||||||||  |||   ||.|||.|  ||                  
BL03796___yes   1544 CCGGCATGGATGAAGAC---TTTTTGGA--AAAGGCGAGAAAGGAGCTTG   1588

BSNT_01180___   1589 --CGGA----CGGAAGAGGAATCGGCCTGTGGAATATTCG-CGAGCGCA-   1630
                       ||||    |||.|||||||||||.|||...|||| ||| |||||||| 
BL03796___yes   1589 TCCGGACAACCGGGAGAGGAATCGGGCTGCAAAATA-TCGACGAGCGCAT   1637

BSNT_01180___   1631 TCAGCCTGACATTCGG---AGAGCCATACGGCTTG-CGGATTCAGAGTGA   1676
                     |||| ||||..||.||   ||.|   ||.|||||| ||..|||| ||.||
BL03796___yes   1638 TCAG-CTGATGTTTGGCAAAGGG---TATGGCTTGACGATTTCA-AGCGA   1682

BSNT_01180___   1677 GCATGAA-AAGGGAACGAGGATTGTGATCACAATACCGTGCCGAAATGAG   1725
                      .|.||| ||||||||...|||..||||.|.||||||.|..|  ||.|.|
BL03796___yes   1683 -AAAGAATAAGGGAACCGTGATGATGATTAAAATACCATTTC--AAAGCG   1729

BSNT_01180___   1726 GTGGTGTGA   1734
                     | |||||||
BL03796___yes   1730 G-GGTGTGA   1737


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