Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01189 and BL03791
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_01189___yesR.1.5803.seq
# -bsequence dna-align/BL03791___yesR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01189___yesR-BL03791___yesR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01189___yesR-BL03791___yesR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01189___yesR
# 2: BL03791___yesR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity: 765/1065 (71.8%)
# Similarity: 765/1065 (71.8%)
# Gaps: 60/1065 ( 5.6%)
# Score: 2540.5
#
#
#=======================================
BSNT_01189___ 1 ATGGCACAGCTTATCTTTGATGAAGAAAAGGTGACGTC-----GGTTATT 45
|||.||.|||||.|.|||||||||||||| || || .||.||.
BL03791___yes 1 ATGACAAAGCTTGTTTTTGATGAAGAAAA----AC-TCAATCAAGTGATC 45
BSNT_01189___ 46 GACCGGATCGTGAAACGGACATTTCAGATGGATTTTGCGTGGGATTGGCC 95
|||.|.|||||.||.|||||||||.||||||||||.|..|||||||||||
BL03791___yes 46 GACAGAATCGTTAAGCGGACATTTGAGATGGATTTCGAATGGGATTGGCC 95
BSNT_01189___ 96 GGGCGGCGTCGCGTTTTACGGTGTGGCGGAGGCCTATGAAGCGACGGAAA 145
|||||||||||||||||||||.|||||.|||||.||||||||.||.||||
BL03791___yes 96 GGGCGGCGTCGCGTTTTACGGCGTGGCTGAGGCGTATGAAGCAACCGAAA 145
BSNT_01189___ 146 ACGAGGAATATATCAATCTGTT-AAAAACGTGGGTGGATGAACAGCTGGA 194
|.||.|||||..||.|.||.|| |||||| |||..|||||||.||||.||
BL03791___yes 146 ATGAAGAATACCTCGAGCTTTTGAAAAAC-TGGACGGATGAAAAGCTTGA 194
BSNT_01189___ 195 GGATGGGCTGCCGCCGCTTTCGATCAACGGAGTTTCCATTGGGCATACGC 244
.||.||..||||...|||.||||||||||||||.|||||.||.|||||.|
BL03791___yes 195 AGACGGATTGCCTAAGCTGTCGATCAACGGAGTATCCATCGGCCATACCC 244
BSNT_01189___ 245 TTTTGTTCCTCCACAAGGTGACAGGTGATGA-CGTGTATTTGGAAACAGC 293
|..|.|..|||.||.|||.||||||.||||| ||| |||.||| ||..|
BL03791___yes 245 TCATATCGCTCTACCAGGCGACAGGAGATGACCGT-TATCTGG--ACGCC 291
BSNT_01189___ 294 GGCCG--AGATGGCGGAATATGTGCTGCATAAGGCGCCGCGCTTTGGCGA 341
|.||| |.||||||||.||||||||.||..|.|||||.||.||.|..||
BL03791___yes 292 GCCCGGCAAATGGCGGACTATGTGCTCCACGAAGCGCCTCGGTTCGCAGA 341
BSNT_01189___ 342 --GGGTATCCTTCAGCATACGGTGAATGCGGCAGAATAC--GTGTTTCCT 387
||||.| |.|||||.||.||.||..|.| |||| || ||.||.|||
BL03791___yes 342 CGGGGTTT--TGCAGCACACCGTCAACTCAG-AGAA-ACATGTATTCCCT 387
BSNT_01189___ 388 GAGCAGGCATGGGCGGATACGCTGATGATGGCTGGGC-TGTTTATGCTGA 436
||.||||||||||..||||||.|||||||||| |||| ||||..|.||..
BL03791___yes 388 GAACAGGCATGGGTCGATACGATGATGATGGC-GGGCTTGTTCCTTCTCC 436
BSNT_01189___ 437 GAATCGG---GCGGATCATGG-AGCGTGAGGATTATTTTGAAGACGGCCT 482
||||||| ||...|| || ||| |||||.||||||||||||||.||
BL03791___yes 437 GAATCGGAAAGCTTGTC--GGCAGC--GAGGAATATTTTGAAGACGGGCT 482
BSNT_01189___ 483 GCGCCAGTTTCACGGACATGAGGACGTGCTTCAGGACCCTGTCACGAATT 532
|.||||||.||||||.|||||.||..|..|.|||||....|..||.|||.
BL03791___yes 483 GAGCCAGTATCACGGCCATGAAGAATTTTTGCAGGATATGGAGACCAATC 532
BSNT_01189___ 533 TGTACTACCACGCCTGGGACAACAAAGCGCAAAATC-ATCTGTCGGGGAT 581
|.||.||.|||||.||||||.|....|| |||||.| |.|||||.||.||
BL03791___yes 533 TTTATTATCACGCATGGGACCATGTGGC-CAAAAACAACCTGTCAGGCAT 581
BSNT_01189___ 582 TTATTGGGGCAGGGCGAACGGCTGGGCGGCACTCACGATGGCAAAGGCGC 631
.|.||||||.||||..|||||.|||||.||..|.|||||||||||.||||
BL03791___yes 582 ATTTTGGGGAAGGGGAAACGGATGGGCAGCTTTAACGATGGCAAAAGCGC 631
BSNT_01189___ 632 TCCCCCTTATTGAGGTGACACATCCTTCCTTTATGATCATCGACGGATCG 681
||||..|.||.||.||.||.|||||.||.|.|||||||||.|||||.|||
BL03791___yes 632 TCCCTTTAATCGATGTTACGCATCCGTCTTATATGATCATTGACGGTTCG 681
BSNT_01189___ 682 CTCAGAGACCAGCTGAGCGCGCTTGTCCGGCTTCAGGATGAATCAGGGCT 731
|||.|.|||..||||||||||||||||.||||||||.||...|||||..|
BL03791___yes 682 CTCCGGGACTTGCTGAGCGCGCTTGTCAGGCTTCAGCATCCCTCAGGTTT 731
BSNT_01189___ 732 GTGGCATACGATTTTGGATGATCCGGATTCTTATCTGGAGGTTTC-GGCA 780
.|||||.||..|..||...||.||||||||.||.||.||.||.|| |||
BL03791___yes 732 ATGGCACACCGTACTGACGGACCCGGATTCATACCTTGAAGTGTCAGGC- 780
BSNT_01189___ 781 TCAGCCGGTATTGCTTCTGCTCTGATGTCGAGCGGAAAGCTGTATAC--A 828
||.|||||.|||||.||.|.|.||.||||.||.||...|| ||||| .
BL03791___yes 781 TCTGCCGGGATTGCATCCGGTTTGCTGTCAAGAGGCTCGC--TATACCAC 828
BSNT_01189___ 829 AAATATGTGCAGAAATCGCTTGCCGCCATTTTGGATGCGGTGGAAGAGGA 878
||||..||.|||||..||||..|.||||||..|||||||||.|.....||
BL03791___yes 829 AAATCCGTTCAGAAGGCGCTCTCAGCCATTACGGATGCGGTCGCGCCTGA 878
BSNT_01189___ 879 CGGACGGGT-CAGCAAG-GTATCGGCCGGGACAGCCGTCATGAAAAATGC 926
||||.|||| .||| | ||.||.||.||.|||||.||.|||....||||
BL03791___yes 879 CGGAAGGGTGGAGC--GCGTTTCTGCGGGTACAGCAGTGATGCGGGATGC 926
BSNT_01189___ 927 CGAAGGATACAAACAGGTGCCTTACAAACGAATACAAGGATGGGGGCAGG 976
..|.||.||||||.|.||.||.||.|||||.||.|||||.|||||.||||
BL03791___yes 927 GCAGGGTTACAAAGACGTTCCGTATAAACGGATTCAAGGCTGGGGACAGG 976
BSNT_01189___ 977 GACTTGCGCTGACGTTTCTTGCTGATGT------TTTGAAAACGAAAAAA 1020
|.|||||.|||||.|||.|.||.||||| .|..||..||
BL03791___yes 977 GGCTTGCCCTGACCTTTTTGGCAGATGTCGTCCGCTCCAAGTCG------ 1020
BSNT_01189___ 1021 CGCGTGTATCAGTAA 1035
||||.||..||.||.
BL03791___yes 1021 CGCGCGTTCCAATAG 1035
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