Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01189 and BL03791

See Amino acid alignment / Visit BSNT_01189 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence dna-align/BSNT_01189___yesR.1.5803.seq
#    -bsequence dna-align/BL03791___yesR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01189___yesR-BL03791___yesR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01189___yesR-BL03791___yesR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01189___yesR
# 2: BL03791___yesR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity:     765/1065 (71.8%)
# Similarity:   765/1065 (71.8%)
# Gaps:          60/1065 ( 5.6%)
# Score: 2540.5
# 
#
#=======================================

BSNT_01189___      1 ATGGCACAGCTTATCTTTGATGAAGAAAAGGTGACGTC-----GGTTATT     45
                     |||.||.|||||.|.||||||||||||||    || ||     .||.||.
BL03791___yes      1 ATGACAAAGCTTGTTTTTGATGAAGAAAA----AC-TCAATCAAGTGATC     45

BSNT_01189___     46 GACCGGATCGTGAAACGGACATTTCAGATGGATTTTGCGTGGGATTGGCC     95
                     |||.|.|||||.||.|||||||||.||||||||||.|..|||||||||||
BL03791___yes     46 GACAGAATCGTTAAGCGGACATTTGAGATGGATTTCGAATGGGATTGGCC     95

BSNT_01189___     96 GGGCGGCGTCGCGTTTTACGGTGTGGCGGAGGCCTATGAAGCGACGGAAA    145
                     |||||||||||||||||||||.|||||.|||||.||||||||.||.||||
BL03791___yes     96 GGGCGGCGTCGCGTTTTACGGCGTGGCTGAGGCGTATGAAGCAACCGAAA    145

BSNT_01189___    146 ACGAGGAATATATCAATCTGTT-AAAAACGTGGGTGGATGAACAGCTGGA    194
                     |.||.|||||..||.|.||.|| |||||| |||..|||||||.||||.||
BL03791___yes    146 ATGAAGAATACCTCGAGCTTTTGAAAAAC-TGGACGGATGAAAAGCTTGA    194

BSNT_01189___    195 GGATGGGCTGCCGCCGCTTTCGATCAACGGAGTTTCCATTGGGCATACGC    244
                     .||.||..||||...|||.||||||||||||||.|||||.||.|||||.|
BL03791___yes    195 AGACGGATTGCCTAAGCTGTCGATCAACGGAGTATCCATCGGCCATACCC    244

BSNT_01189___    245 TTTTGTTCCTCCACAAGGTGACAGGTGATGA-CGTGTATTTGGAAACAGC    293
                     |..|.|..|||.||.|||.||||||.||||| ||| |||.|||  ||..|
BL03791___yes    245 TCATATCGCTCTACCAGGCGACAGGAGATGACCGT-TATCTGG--ACGCC    291

BSNT_01189___    294 GGCCG--AGATGGCGGAATATGTGCTGCATAAGGCGCCGCGCTTTGGCGA    341
                     |.|||  |.||||||||.||||||||.||..|.|||||.||.||.|..||
BL03791___yes    292 GCCCGGCAAATGGCGGACTATGTGCTCCACGAAGCGCCTCGGTTCGCAGA    341

BSNT_01189___    342 --GGGTATCCTTCAGCATACGGTGAATGCGGCAGAATAC--GTGTTTCCT    387
                       ||||.|  |.|||||.||.||.||..|.| |||| ||  ||.||.|||
BL03791___yes    342 CGGGGTTT--TGCAGCACACCGTCAACTCAG-AGAA-ACATGTATTCCCT    387

BSNT_01189___    388 GAGCAGGCATGGGCGGATACGCTGATGATGGCTGGGC-TGTTTATGCTGA    436
                     ||.||||||||||..||||||.|||||||||| |||| ||||..|.||..
BL03791___yes    388 GAACAGGCATGGGTCGATACGATGATGATGGC-GGGCTTGTTCCTTCTCC    436

BSNT_01189___    437 GAATCGG---GCGGATCATGG-AGCGTGAGGATTATTTTGAAGACGGCCT    482
                     |||||||   ||...||  || |||  |||||.||||||||||||||.||
BL03791___yes    437 GAATCGGAAAGCTTGTC--GGCAGC--GAGGAATATTTTGAAGACGGGCT    482

BSNT_01189___    483 GCGCCAGTTTCACGGACATGAGGACGTGCTTCAGGACCCTGTCACGAATT    532
                     |.||||||.||||||.|||||.||..|..|.|||||....|..||.|||.
BL03791___yes    483 GAGCCAGTATCACGGCCATGAAGAATTTTTGCAGGATATGGAGACCAATC    532

BSNT_01189___    533 TGTACTACCACGCCTGGGACAACAAAGCGCAAAATC-ATCTGTCGGGGAT    581
                     |.||.||.|||||.||||||.|....|| |||||.| |.|||||.||.||
BL03791___yes    533 TTTATTATCACGCATGGGACCATGTGGC-CAAAAACAACCTGTCAGGCAT    581

BSNT_01189___    582 TTATTGGGGCAGGGCGAACGGCTGGGCGGCACTCACGATGGCAAAGGCGC    631
                     .|.||||||.||||..|||||.|||||.||..|.|||||||||||.||||
BL03791___yes    582 ATTTTGGGGAAGGGGAAACGGATGGGCAGCTTTAACGATGGCAAAAGCGC    631

BSNT_01189___    632 TCCCCCTTATTGAGGTGACACATCCTTCCTTTATGATCATCGACGGATCG    681
                     ||||..|.||.||.||.||.|||||.||.|.|||||||||.|||||.|||
BL03791___yes    632 TCCCTTTAATCGATGTTACGCATCCGTCTTATATGATCATTGACGGTTCG    681

BSNT_01189___    682 CTCAGAGACCAGCTGAGCGCGCTTGTCCGGCTTCAGGATGAATCAGGGCT    731
                     |||.|.|||..||||||||||||||||.||||||||.||...|||||..|
BL03791___yes    682 CTCCGGGACTTGCTGAGCGCGCTTGTCAGGCTTCAGCATCCCTCAGGTTT    731

BSNT_01189___    732 GTGGCATACGATTTTGGATGATCCGGATTCTTATCTGGAGGTTTC-GGCA    780
                     .|||||.||..|..||...||.||||||||.||.||.||.||.|| ||| 
BL03791___yes    732 ATGGCACACCGTACTGACGGACCCGGATTCATACCTTGAAGTGTCAGGC-    780

BSNT_01189___    781 TCAGCCGGTATTGCTTCTGCTCTGATGTCGAGCGGAAAGCTGTATAC--A    828
                     ||.|||||.|||||.||.|.|.||.||||.||.||...||  |||||  .
BL03791___yes    781 TCTGCCGGGATTGCATCCGGTTTGCTGTCAAGAGGCTCGC--TATACCAC    828

BSNT_01189___    829 AAATATGTGCAGAAATCGCTTGCCGCCATTTTGGATGCGGTGGAAGAGGA    878
                     ||||..||.|||||..||||..|.||||||..|||||||||.|.....||
BL03791___yes    829 AAATCCGTTCAGAAGGCGCTCTCAGCCATTACGGATGCGGTCGCGCCTGA    878

BSNT_01189___    879 CGGACGGGT-CAGCAAG-GTATCGGCCGGGACAGCCGTCATGAAAAATGC    926
                     ||||.|||| .|||  | ||.||.||.||.|||||.||.|||....||||
BL03791___yes    879 CGGAAGGGTGGAGC--GCGTTTCTGCGGGTACAGCAGTGATGCGGGATGC    926

BSNT_01189___    927 CGAAGGATACAAACAGGTGCCTTACAAACGAATACAAGGATGGGGGCAGG    976
                     ..|.||.||||||.|.||.||.||.|||||.||.|||||.|||||.||||
BL03791___yes    927 GCAGGGTTACAAAGACGTTCCGTATAAACGGATTCAAGGCTGGGGACAGG    976

BSNT_01189___    977 GACTTGCGCTGACGTTTCTTGCTGATGT------TTTGAAAACGAAAAAA   1020
                     |.|||||.|||||.|||.|.||.|||||      .|..||..||      
BL03791___yes    977 GGCTTGCCCTGACCTTTTTGGCAGATGTCGTCCGCTCCAAGTCG------   1020

BSNT_01189___   1021 CGCGTGTATCAGTAA   1035
                     ||||.||..||.||.
BL03791___yes   1021 CGCGCGTTCCAATAG   1035


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