Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01192 and BL03790
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_01192___yesS.1.5803.seq
# -bsequence dna-align/BL03790___yesS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01192___yesS-BL03790___yesS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01192___yesS-BL03790___yesS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01192___yesS
# 2: BL03790___yesS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2546
# Identity: 1515/2546 (59.5%)
# Similarity: 1515/2546 (59.5%)
# Gaps: 523/2546 (20.5%)
# Score: 3894.5
#
#
#=======================================
BSNT_01192___ 1 ATGAAAAAACAGCCTCAACAGA-AGGAACGGGTTTCTCGCTGGAAGGGAA 49
||||||||.|.||.|||| ||| | .|||||.||..|.||.||.|
BL03790___yes 1 ATGAAAAAGCTGCATCAA-AGATA------TGTTTCACGGCGTAAAGGGA 43
BSNT_01192___ 50 CGTATTTCAAAAGAAACTTTGTCTTCATTTTGCTGATTGCCTGTATTCCC 99
..|.|||.||||.||.||||||..|.||..||||||||||.|||||||||
BL03790___yes 44 GTTTTTTTAAAAAAAGCTTTGTGATGATCCTGCTGATTGCGTGTATTCCC 93
BSNT_01192___ 100 GGATTGCTGACTGGCGGCGCAATCTACTTTCTTTCG--ATCGACAAGGTG 147
||.||..||||.||.|..|.|.||||.||..||||| ..|||.|| |.
BL03790___yes 94 GGCTTATTGACGGGTGCAGGAGTCTATTTGTTTTCGGCTGCGAAAA--TT 141
BSNT_01192___ 148 GAGAAAGAGCTGCAA-AGGTC-GCATGA-AACACAGGTGGCGCGTGAGGT 194
||.||||||||.||| | || |||.|| ||| ||||||...||..|..|
BL03790___yes 142 GAAAAAGAGCTCCAACA--TCTGCACGAGAAC-CAGGTGAAACGCCAAAT 188
BSNT_01192___ 195 CAGCCGAATGGATGAGAAGCTGGGAGTGCTTGAACTGGCA--CTCACCCA 242
|||||.|||.|||||.|||||||.||.||||||..| || |||.||||
BL03790___yes 189 CAGCCAAATCGATGACAAGCTGGAAGGGCTTGAGAT--CATGCTCTCCCA 236
BSNT_01192___ 243 GATGGCCTACGATTCTTCACTGATGAACGGATTGGCCGAGAGGGATTTGG 292
|.|.||.||.|||.|....|||||||||||..|||||||....|||.||.
BL03790___yes 237 GCTTGCATATGATCCGCGCCTGATGAACGGTCTGGCCGATGCCGATCTGC 286
BSNT_01192___ 293 AGAAAGACTTT------ACGT------TCTCCTATCAATTAACGAAAAA- 329
|.|..||.||| |||| |||| ||||
BL03790___yes 287 AAACGGATTTTCAAACGACGTACAAGCTCTC--------------AAAAT 322
BSNT_01192___ 330 -GCTGTTTCTTTTGCGGGACCAGCAGCCGCTGATCGAGCAGGCCTCCATC 378
|||||||.|..|.|.|||.||..|.|||||.||..|..|||
BL03790___yes 323 CGCTGTTTTTGCTTCAGGATCAAAATCCGCTCATTCACAAGG-------- 364
BSNT_01192___ 379 TTTCTGAAC------------------AGCCCCCGG--CCTCTTGTGCTG 408
.||||| |||| | .|||| |.
BL03790___yes 365 ---TTGAACTGTTCATTCAAGGGAAGGAGCC----GATTCTCT-----TA 402
BSNT_01192___ 409 AGCCCTGAATACAGCGCTTTGACAGAACAGGAGGCGCTTCGCAAG---TA 455
|..||.|||||||.||...||||.| ||.|||....||| .||| ||
BL03790___yes 403 AATCCAGAATACAACGGACTGACCG-ACCGGAAAATCTT--GAAGGCTTA 449
BSNT_01192___ 456 TCGCTCGCTGCTTTCCTCAGA------CCACAGCATTTATTGGAAA---- 495
||..||||||||| || .||.|.|.|.|||||||||
BL03790___yes 450 TCATTCGCTGCTT------GAAGGCGGTCAAAACGTCTATTGGAAAGACA 493
BSNT_01192___ 496 ----CGG-------TCGGGAAACCAAGCGATG---CTGATCCAGCTCATT 531
||| ||.||| ||| ||..||||....|||
BL03790___yes 494 TGAGCGGCGCTTCATCCGGA---------ATGGCCCTTGTCCATAAAATT 534
BSNT_01192___ 532 CCGGG-CGCGGCGGAGAAACCGTTCGGCGCGATCATGCTGGCGGTTGATC 580
||||| .||..|..|| ||||||||||||||.|.||..||.||.||||
BL03790___yes 535 CCGGGAGGCATCTTAG-AACCGTTCGGCGCGCTGATTTTGACGCTTGA-- 581
BSNT_01192___ 581 CGAAAGAAATGGAATCAATCC---TGC---AAAGCTTGTCCCCCTATCCT 624
||||||| ||||....|| ||| |.|||.|.||.||.|||.|.
BL03790___yes 582 CGAAAGA----GAATTGGGCCGGTTGCTTGAGAGCCTTTCGCCGTATTCA 627
BSNT_01192___ 625 GATGGAAGTGCGCTGCTTTTAGATCAAAATCGAGAGGTGCTGTTTCATGA 674
.|.||||..|||||.|||||..||||.|||| |||.| .|||||||.|
BL03790___yes 628 AAGGGAACAGCGCTCCTTTTTCATCATAATC-AGAAG-CCTGTTTCTT-- 673
BSNT_01192___ 675 GGGAG----------AAAA--AGATTTTAAAAAGACTTTA--------CT 704
|||| |||| |..|||.|||..|.|||.| ||
BL03790___yes 674 -GGAGCAATCGCGGCAAAACCAACTTTGAAAGCGCCTTAAAAGAAAGGCT 722
BSNT_01192___ 705 TCAAGAGATAAAAAAACAGCCTGCTGAGAAC--GGCCATTTTCAGATGGA 752
| ||||.|.|||||.|.|| || |||...|||...|||||
BL03790___yes 723 T---GAGAAACAAAAAAATCC--------ACAGGGCTCCTTTGTTATGGA 761
BSNT_01192___ 753 ATGGGAAGGCAAGGT--GTATTCTGTCTCCTTTGGAGAAATGAACCGGAT 800
.||| ||...|||| ||||||.||.||.|..|||..||||.||.|..|
BL03790___yes 762 TTGG--AGCGGAGGTGCGTATTCCGTTTCATACGGACGAATGGACAGATT 809
BSNT_01192___ 801 GCATCAGCAATGGACCTTTGTGTCAGCGGCGCCTCTTTCAGCTATTACAG 850
|.|.|||.|||||||||.|||.||.||..|.||..|.||.||.|||||.|
BL03790___yes 810 GAACCAGGAATGGACCTATGTTTCGGCTTCACCGATGTCGGCCATTACGG 859
BSNT_01192___ 851 CGCCGATGGTGTTTTTATCAAAAGTGATCATCGTGATGCT-GGTCATTTG 899
|.|||.||.||||||||||.|| |.||||||.| | ||||| |
BL03790___yes 860 CTCCGGTGCTGTTTTTATCGAA---GCTCATCGCG----TCGGTCA---G 899
BSNT_01192___ 900 CATCG--------GT--TTGGCGGTATGCATGACATGGTATGCATCAAAA 939
||||| || |||.|...||.| ||.||||||||||.|||.|.
BL03790___yes 900 CATCGCCGGGATCGTTCTTGCCTTCATTC-TGGCATGGTATGCGTCACAC 948
BSNT_01192___ 940 AAAATCTATCGTCCCATTCAGCATTTGCTTGGCT----------TGTTTA 979
|||||.| |||||.|..|.||..|||| ||.|
BL03790___yes 949 AAAATTT--------ATTCACCTGTCGCAAGGCTGATCAAGCTCTGCT-- 988
BSNT_01192___ 980 CCGGAGGAGAGAAGAAAACATGGCAGGCG--------TCCGGGCAGGATG 1021
||||| |||.||| ||||| ||| |||||
BL03790___yes 989 CCGGA-GAGGGAA-----------AGGCGGCCTATTTTCC-----GGATG 1021
BSNT_01192___ 1022 AATTCAAGTGGATTGAAAAGAGGTGGCAGGATCTATCCCTTGAAAGCCGG 1071
||||..|.|||.|.||.|||.|.|||.|.||.|||||....||||| |||
BL03790___yes 1022 AATTTCATTGGCTCGAGAAGCGCTGGGAAGACCTATCTGAGGAAAG-CGG 1070
BSNT_01192___ 1072 AAG-CTCCAAGAGCAGCTCCTGCGGCAGACGCCCCAT-ATGAAAAAGAGT 1119
.|| ||..||.||.|.|| ||||||| .||.|||.| .|
BL03790___yes 1071 CAGACTGAAAAAGGAACT------------GCCCCATGCTGCAAACG-TT 1107
BSNT_01192___ 1120 TTTTTGCAGCACCTCTTGCAGGGGGATTTTTACT------ATGA--CAAC 1161
|||||.||||.|||..|| ||.|| .|||| |||| ||..
BL03790___yes 1108 TTTTTTCAGCGCCTTCTG-AGCGG-----ATACTTTGCAGATGAATCAGA 1151
BSNT_01192___ 1162 GAGGACAGTCTCAGATCTCGGATG--GAGGAGGCCGGCTGG-----AACA 1204
|||| |.|.|.|||..|||..|| .|||.|| |||||| ||.|
BL03790___yes 1152 GAGG--AATTTGAGAGATCGTCTGAAAAGGTGG--GGCTGGGAAGCAAAA 1197
BSNT_01192___ 1205 TCGGCGAAAACGTGTTT--CATGTGC-TGGATCTACAGGTGACAGGGCTC 1251
||.||.|||||| ||| | |.|||.|.|||.||||.||.||
BL03790___yes 1198 -----GACAATGTGTTTACCAT---CATCGATGTCCAGCTGACGGGACT- 1238
BSNT_01192___ 1252 CGCTGTGAA--AAAAGCGTCTT---CCGTGAAGGTGATGAACAGCTTGCC 1296
||..||| |||.|..|||| |....||| |||||| ||..||.|
BL03790___yes 1239 --CTACGAAGGAAACGGATCTTTTACAAAAAAG--GATGAA-AGTCTGGC 1283
BSNT_01192___ 1297 GTGTTT----------ACCCTGAC---CAATCTGGCTGAGGAATTGGCGG 1333
|.|.|| |.|.|.|| |.|.|||||| |||| ||
BL03790___yes 1284 GGGCTTTCTGTTGGGAAACATTACGCGCGAACTGGCT--GGAA-----GG 1326
BSNT_01192___ 1334 A---TAAACGCGTTTTT------CAGCTCTCCATACTTGATATCG---GC 1371
| |.||| |.|.||| |||.|.|||.| |.|.||||| ||
BL03790___yes 1327 ACATTCAAC-CATATTTATATGACAGATGTCCGT--TCGCTATCGCTTGC 1373
BSNT_01192___ 1372 CG-GCTTTCTGTC-ACCGTTCTTGTAATGAAAACAAACAGCTCTGATCTG 1419
.| || |.|||.| |.||..| |.||| ||||| || |.
BL03790___yes 1374 GGTGC-TGCTGGCGAGCGGCC--GGAAT--------ACAGC-CT----TC 1407
BSNT_01192___ 1420 AAGGCGTATATAACGGAGCTGGCACGCCAATTTGGG------------GA 1457
|||| || ||..|.|| ||||||||.| ||
BL03790___yes 1408 AAGG-------AA--GAAATCGC---CCAATTTGTGCGTGAGCTGACAGA 1445
BSNT_01192___ 1458 TGTAACCGGAC----TATGC---CTG-ACCTCGACATTGA--GCAGCAAA 1497
|||.|.| .|| |||.| ||| ||.|| |||.||| |.|.||||
BL03790___yes 1446 TGTGATC-TACAGCATATCCAAACTGCACGTC-ACAGTGACGGTATCAAA 1493
BSNT_01192___ 1498 ACGGAGCG-TATCACG------GAAATTCCTTC----TTTATTTCAGA-- 1534
| |.|| |..||.| ||.||||| | ||||| ||
BL03790___yes 1494 A---ACCGCTGACAAGTTAAAAGACATTCC--CGGCATTTAT----GAAG 1534
BSNT_01192___ 1535 ATGTGAAATGCGGCA---AATCCCGCAGGAAGTTTGCTAA--CCGGGATC 1579
|.||||||...|||| |.| .|||..||||.|..|| ||.| .|
BL03790___yes 1535 AGGTGAAAGAAGGCAGGCATT---ACAGACAGTTCGAAAACGCCAG--CC 1579
BSNT_01192___ 1580 AGGTCATTGATTT------GCAGGCCGACTTCCCTCAGGATG-AGCAGTT 1622
||||.||.||||| ||.||..|||.|.||||..|.|| |.||
BL03790___yes 1580 AGGTGATCGATTTAAGCCGGCGGGAAGACATGCCTCCCGCTGAATCA--- 1626
BSNT_01192___ 1623 CGCTCCTTATTACCCTTTTGAGCTGGAAAAACAAATTGTTCA-GGCCATC 1671
||.||.||.||.|..||.||||||.|..|.| ||| |||..|.
BL03790___yes 1627 -------TACTATCCGTTCGCTCTTGAAAAAGAGGTAG-TCAGGGCGTTG 1668
BSNT_01192___ 1672 CGGCTGGAAAGAAAACAGGAAGCCAAG--GAACTGATAGATGGA------ 1713
|||||.| |||||| .|||.| ||| ||| |||.|||
BL03790___yes 1669 CGGCTTG-AAGAAA--GGGATG--AAGTCGAA-----AGAAGGATCAGGC 1708
BSNT_01192___ 1714 --TGTATGAAGGAACTG-GCGGAAAAGGCGGCCATAGACAGGCATGTGCA 1760
|.|||...|||.||| .||.|||||| |.|.||.|..||..|||
BL03790___yes 1709 TGTTTATCCGGGAGCTGTCCGAAAAAGG-----AAAAACGGAAATCCGCA 1753
BSNT_01192___ 1761 TTCCGC----CCTGATTCAGCTGTTTTCCCGC----ATTCAGGAGGATAT 1802
|.|.|| |.||||.|||||||| ||| ||.||.||.||.||
BL03790___yes 1754 TCCAGCCGGGCATGATGCAGCTGTT----CGCAAAGATCCAAGAAGAGAT 1799
BSNT_01192___ 1803 TTTGCATTCCGGGCTCAATCCCAGCGAACTGTTTCAGCACCG---GAATC 1849
.||.||||||||.||..|.|||...|||.|| ||||| ||| .||.|
BL03790___yes 1800 CTTTCATTCCGGCCTTCACCCCTATGAATTG-TTCAG--CCGAAAAAACC 1846
BSNT_01192___ 1850 CGTTTCTTGATATTTCAGAATTGCGCGAACCTAACGAAGCGG----CGGC 1895
.|.|||..||..||||.||..||.|.||.|| .|||..|| |||
BL03790___yes 1847 TGCTTCAGGAGCTTTCGGAGCTGAGGGAGCC---GGAAAGGGCTGTCGG- 1892
BSNT_01192___ 1896 CTGGCTGATGGA----TGCAGTGGTGACGCCTTACCTTTCCAAGCTTGAG 1941
||||.||||||| |||| |.|..|||||.|||....||.|.||.
BL03790___yes 1893 CTGGATGATGGAGCGTTGCA----TAAGCCCTTATCTTAAAGAGATGGAA 1938
BSNT_01192___ 1942 GGCAGAAAAAACAGACAGCAAAAGCAGCTGGCAGAACGTGTGATTGCGAT 1991
||.||.|||||||||||||||||.|.|||.|..||||..|||.|||.|||
BL03790___yes 1939 GGAAGGAAAAACAGACAGCAAAAACGGCTTGTCGAACAGGTGCTTGAGAT 1988
BSNT_01192___ 1992 GATTCACGAACAGTATATGGCGGACATTTCATTGGAAAGCTGTGCCGAT- 2040
||||||..|..|.||||||...||.||.||..|.||||||||.||.|||
BL03790___yes 1989 GATTCATCAGGATTATATGAACGATATCTCGCTTGAAAGCTGCGCTGATC 2038
BSNT_01192___ 2041 GCGCTTGGCATGAATTCCTATACGTTAAGCAAGGCATTTAAGCAAGTGAC 2090
|.|| .||.|.||||||.|||||..|.|||||.||.||.||.|||||.||
BL03790___yes 2039 GGGC-CGGGACGAATTCGTATACCCTGAGCAAAGCTTTCAAACAAGTAAC 2087
BSNT_01192___ 2091 CGGCATTAATTTTATCGATTATGTGACCCAGATCAGAATCGAAAAGGCGA 2140
||||||.|||||||||||.|||||.||||.|.|||||||||||||.||||
BL03790___yes 2088 CGGCATCAATTTTATCGACTATGTTACCCGGCTCAGAATCGAAAAAGCGA 2137
BSNT_01192___ 2141 AAGAACTGCTGGTCAATACGAATAAAAAAATTCATGATGTGTCTGAAGAA 2190
||||.|||||..|..|.||||||||||||||.|||||.||.||||||||.
BL03790___yes 2138 AAGAGCTGCTTCTTGAGACGAATAAAAAAATCCATGACGTTTCTGAAGAG 2187
BSNT_01192___ 2191 GTCGGCTATCGCCACAATTATTTCAATCGGATTTTTAAAAAACAGGTCGG 2240
||||||||..|.||||..||||||||.||||||||.||.||.||||||||
BL03790___yes 2188 GTCGGCTACAGACACAGCTATTTCAACCGGATTTTCAAGAAGCAGGTCGG 2237
BSNT_01192___ 2241 CATGCCGCCGGGTGTCTTCAGGCAAATGTATCAGGAAACGCCGTGA 2286
|||.||||||.|...||.||||||.||..||||||||.|..|||||
BL03790___yes 2238 CATTCCGCCGAGCCGCTACAGGCAGATTCATCAGGAATCTTCGTGA 2283
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