Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01195 and BL03788
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_01195___yesU.1.5803.seq
# -bsequence dna-align/BL03788___yesU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01195___yesU-BL03788___yesU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01195___yesU-BL03788___yesU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01195___yesU
# 2: BL03788___yesU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity: 455/744 (61.2%)
# Similarity: 455/744 (61.2%)
# Gaps: 132/744 (17.7%)
# Score: 1293.0
#
#
#=======================================
BSNT_01195___ 1 -------------ATG---TATAAGGAAGGCGCGTGCCTG---TACCACA 31
||| .|.|||||| ||||| ||.||.|
BL03788___yes 1 GTGCCGGAGTGTAATGGAAGAGAAGGAA-------GCCTGATTTATCAAA 43
BSNT_01195___ 32 -------ATCCGCTCCGGTCAGTTAGTGATGTAAAG--------GACTGG 66
|||..|||| |.||| |.||||
BL03788___yes 44 ACCCTTTATCTTCTCC---------------TGAAGATCTCCGCGGCTGG 78
BSNT_01195___ 67 CGGATGGAGGGAGGCGGACAG--ATC--TCATTTGACGATCA------CA 106
..||||||.| |||.|| ||| ||.||| ||| |.
BL03788___yes 79 GTGATGGAAG-----GGAAAGGAATCGTTCGTTT-----TCAGAACGGCC 118
BSNT_01195___ 107 GCTTGC-------------ACCTGTCACATGTCCA------GGACGAAGC 137
||.||| ||.||.|.| ||..|| ||||||.||
BL03788___yes 119 GCCTGCATATGGAGAACGAACTTGACGC-TGAGCAATATGGGGACGATGC 167
BSNT_01195___ 138 GCACTTTGTCTTTTGGTGTCCGGAAACCTTTCCAGACGGCATCATTGTGA 187
.||.|||||.|..|||||.||.||.||.||.||.||.||.||..||||||
BL03788___yes 168 TCATTTTGTTTACTGGTGCCCTGAGACATTCCCTGATGGAATTGTTGTGA 217
BSNT_01195___ 188 CATGGGACTTCT-CTCCGATCGAGCAGCCTGGACTGTGTATGCTGTTTTT 236
..|||||.|||| |.|.|..|| |.|||||||..|.||.|||.|.|||||
BL03788___yes 218 AGTGGGATTTCTACCCTGTGCG-GGAGCCTGGCTTATGCATGATATTTTT 266
BSNT_01195___ 237 TGCCGCTGCGGGTATTCGCGGCGAGGATTTGTTTGACACAAGTCTCAGGA 286
|||.||.||.||.||....|||||.|||||.||||||....|.||...|.
BL03788___yes 267 TGCAGCCGCCGGCATGAATGGCGAAGATTTATTTGACGGGCGGCTGGCGG 316
BSNT_01195___ 287 AAAGAACAGGAACATACCCTGAGTATCATTCAGGAGATATCAATGCCCTC 336
|.||.||.||.|.|||.||..|.||||||||.||.||.|||||..|..|.
BL03788___yes 317 AGAGGACGGGGAAATATCCGCAATATCATTCCGGGGACATCAACACATTG 366
BSNT_01195___ 337 CACCTGTCGTATTTCCGCAGA---AAATACCCGGAGGAAAGAGCATTCCG 383
|||||||||||||| |||| ||..|..|.||.||||||||||||||
BL03788___yes 367 CACCTGTCGTATTT---CAGACATAAGCATGCTGATGAAAGAGCATTCCG 413
BSNT_01195___ 384 CACCTGCAATTTAAGAAAAAGCCGCGGTTTCCACCTCGCC---GAAATGG 430
.||.|||||..|.||.|||||||||||.||.|||||||.| ||| |
BL03788___yes 414 AACATGCAACCTCAGGAAAAGCCGCGGCTTTCACCTCGTCTGTGAA---G 460
BSNT_01195___ 431 GGGCCGATCCGCT---GCCTTCTCCAGACGACGCTGATT--CTCCGTATC 475
|.||.|||||||| |||..||.|| |||||| || ||||.||.|
BL03788___yes 461 GAGCTGATCCGCTTCCGCCCGCTGCA---GACGCT--TTGCCTCCCTACC 505
BSNT_01195___ 476 GTATGAAGCTGATCAAAGACAAAGGC-TATGTGCACTTTTCAATCAATGG 524
|.||||||||.||.||.||| ..||| ||.||.|..|||||||||||.|.
BL03788___yes 506 GGATGAAGCTCATAAAGGAC-GGGGCATACGTTCGTTTTTCAATCAACGA 554
BSNT_01195___ 525 TCTGCCCATTCTTGAGTGGATGGACGACGGCAGCACTTATGGGCCTGTGT 574
.|||||||||.|.||.||||.|||.||||||||...||..||.||||| |
BL03788___yes 555 GCTGCCCATTTTGGAATGGACGGATGACGGCAGGCGTTTCGGCCCTGT-T 603
BSNT_01195___ 575 TA----ACAAAAGGAAAAATCGGGTTCCGGCAGATGGCCCCCATGAAAGC 620
|| .| ||||||.|||||.|||.|.||.|||||.||..||.||||
BL03788___yes 604 TACGGCGC---AGGAAAGATCGGCTTCAGACAAATGGCTCCGCTGGAAGC 650
BSNT_01195___ 621 AGCTTACAGGGATTTTGCCGTGCATCAAGC-GGTGAGAAGATGA 663
|||.|||....|.||||..|||| .||.|| |.||.|..|.|||
BL03788___yes 651 AGCCTACGCCAACTTTGAAGTGC-GCAGGCTGCTGCGCGGCTGA 693
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