Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01196 and BL03787
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_01196___yesV.1.5803.seq
# -bsequence dna-align/BL03787___yesV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01196___yesV-BL03787___yesV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01196___yesV-BL03787___yesV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01196___yesV
# 2: BL03787___yesV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity: 374/699 (53.5%)
# Similarity: 374/699 (53.5%)
# Gaps: 204/699 (29.2%)
# Score: 1047.5
#
#
#=======================================
BSNT_01196___ 1 ----------------------------------------GTG------- 3
|||
BL03787___yes 1 ATGCGGGATAAAGGCGTAATGGCGATGATGTACGGCGCGTGTGAAGCGAT 50
BSNT_01196___ 4 -GTGAAAATAGCATGGCTCAACGGGCTGTGGCTGTTGTTTACACTTTTGG 52
.|||||||.||.|||||.||||||.|.|||.|.||.||.||.||....|
BL03787___yes 51 CATGAAAATCGCCTGGCTGAACGGGATCTGGGTTTTATTCACGCTGGGAG 100
BSNT_01196___ 53 GCGGCGTTCTTTTCGGATGGGCGCCGAGCACAGCCGCGATGT-------- 94
|.|||.||.|||||||.||||||||||||||.||.|||||||
BL03787___yes 101 GAGGCATTGTTTTCGGCTGGGCGCCGAGCACGGCTGCGATGTTCACGGTC 150
BSNT_01196___ 95 GTGCCGTTATAAGGAAATGGCTGATGGGGCAAAAGGATGTCCCGATATTT 144
|||| |.||.||||||.|.||.|..|.|||.|..|||.| .||
BL03787___yes 151 GTGC--------GCAAGTGGCTGCTCGGCCGGACGGACGCACCGCT-GTT 191
BSNT_01196___ 145 C----CGTTATTTCTCGATACCTATAAAAAAGAGTTTCTCAAGGTTAATG 190
| ||||.|.|| |.||.|||||||||||||||.|| ||.|
BL03787___yes 192 CAAAACGTTTTATC---AAACGTATAAAAAAGAGTTTTTC------AAAG 232
BSNT_01196___ 191 CGATCGGA-TTGGCGTTTTCGGCTCTTTTGCTC-------ATATTGTCCG 232
|.|.|||| ||||..|..|| |||.||..|.| ||.||.|.||
BL03787___yes 233 CAAACGGACTTGGGCTCATC--CTCATTACCGCCGGAACAATTTTATTCG 280
BSNT_01196___ 233 CGAACTATCATTATTTTTCTGC--CAGTACGGATTGGCTGTC-------- 272
..|||||||| |||||||.|| |.||.||||||...|.||
BL03787___yes 281 TAAACTATCA--ATTTTTCCGCGTCCGTGCGGATTTATTTTCGATCATGA 328
BSNT_01196___ 273 ----CTTTGCAGTAACAAGCTGCACGCTGCTTGCAGGGCTTTTGTATATC 318
||.||| |||.|||.|.||.|||||..|.|||.||
BL03787___yes 329 TCAGCTATGC------------CACACTGGTGGCCGGGCTCATCTATCTC 366
BSNT_01196___ 319 ATCGCGCTGATGTATGTGTTTCCCCTTTATGTGCATTACCAGCTCCCGCT 368
.|.|...|.||.|||.|.|||||.|||||.||.|||...|||||.|||.|
BL03787___yes 367 GTGGTTTTCATTTATATTTTTCCGCTTTACGTTCATGTTCAGCTGCCGTT 416
BSNT_01196___ 369 T---CGCAAATATATTCCGCAGGCACTGCTGTTTGG-------CGCCATG 408
| ||| |||.||.|.|||||...||||.|.|| |||
BL03787___yes 417 TGTCCGC---TATTTTTCACAGGCTGCGCTGATCGGTCTCGTTCGC---- 459
BSNT_01196___ 409 AGGCCGCTGACAACCGGC-----TGTATGCTGATCGGGTGCGGATTTGTC 453
||..||||.| |||| ||..|||||.| ||.||| ||.|||
BL03787___yes 460 ---CCTTTGACGA-CGGCCGGAATGGCTGCTGCT-GGTTGC---TTGGTC 501
BSNT_01196___ 454 CTTTATTTGCTGTATACGCTTCCTGGCCTGATCCCATTTTACGGCCCGT- 502
.|.|||.||||||..|||.||||.||.||||||||||||||.|| .||
BL03787___yes 502 GTGTATGTGCTGTTGACGGTTCCGGGTCTGATCCCATTTTATGG--TGTC 549
BSNT_01196___ 503 -GTTTATTTGGGCTTGTTTTGA-----------------TGTTTTTTGC- 533
||||.||||..|||||.|.|| ||||||||||
BL03787___yes 550 AGTTTGTTTGCTCTTGTATCGATGTTTATCGCACATCGCTGTTTTTTGCG 599
BSNT_01196___ 534 TCTTAGGGGATTTCAAAAGACGGAGGCCCGGCATCATCAAGCCGGGTAA 582
||| ||| ||||..|
BL03787___yes 600 TCT----GGA-------------AGGCTAG------------------- 612
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