Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01212 and BL03779
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:44
# Commandline: needle
# -asequence dna-align/BSNT_01212.1.5803.seq
# -bsequence dna-align/BL03779___yetA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01212-BL03779___yetA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01212-BL03779___yetA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01212
# 2: BL03779___yetA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2626
# Identity: 646/2626 (24.6%)
# Similarity: 646/2626 (24.6%)
# Gaps: 1754/2626 (66.8%)
# Score: 2051.0
#
#
#=======================================
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1 GTGAAAGCACAGGCTGAACTAAAATGGCTGAATAGAGCGCCTGCTTCGTT 50
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 51 CGGCGGGGTGACTTGGGGAGTGCCTTGGGCAAAAGGAGTGCTGCAAAAAG 100
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 101 GGGAGACGGCCGTCATCGCTTCGGAAAACGCCCCGTATTTGCAAACATGG 150
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 151 CCGCTTGCATATTGGCCTGACGGCTCGATTAAATGGACGGGCCATGCCGC 200
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 201 AGTATTCCCAGAAGAAAGCGGACGCCGATTTACATTGCAAAAAGGAAAGC 250
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 251 CCGGCGCGCCGAAAACCGTCGTCCGTGTCAGCGAGCAGAAAGACGAAATC 300
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 301 ACGGTGAATACGGGCGCGATAGTCTGCAAGCTCGGAAAGTCGGGGCCGGC 350
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 351 ACTGATCCGTTCGATTTCCATTTCCGGGGAAATGATGGCGAAAGAAGGAC 400
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 401 GGCTCATCGCTTTAAAAGAAAAAAGAAGCGGTTCAGATACACAAAGCATG 450
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 451 TATTATATTGAACGGTTTGAGAGCTTGGTCAAACGTGCGGCAATCGAACA 500
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 501 AAACGGTCCGGTCAAGACAGTCATCAAGATTGAAGGCGTCCACCGCGGCG 550
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 551 GAGGCATCGATGTTTGGCTCCCTTTTACCGTCAGGCTTTCTTTCTATGCC 600
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 601 GGTGTCCCGTCCATCCGGATCGTGCACACGATCTTCATCGACTGTAACGC 650
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 651 AGAAACGGAATGGATCAAAGGACTCGGTTTAGAGATGAGCGCGGTTTTGA 700
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 701 GCGGAGCGCCAAGAAACAGGCATATTCGCTATGCAGCCGACGGAGGAATT 750
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 751 TACGGAGAGGCTTCTCAGCTGCTTGTGACGAGAAGATTTAATGAAACAAA 800
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 801 CGGGTTCTATGAACGACAGATAGCCGGACAGCCTGTCCCGGAAGAGTCGG 850
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 851 AAGTCGTGCGTGATGCAGAGAAAAACGCCGTCTGGAACGATTTCAAGCTC 900
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 901 ATTCAGGATTCCCCTGTTCACTGGCGCTTAAAAAAGCGAACCGGCAAAGA 950
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 951 CTGCGCCTGGGTGGACGCGATTCATGGGGGGAGAGCGAAAGGGCTGATGT 1000
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1001 ATGCAGGCGGGGAAAATGGCGGCATCGCGCTCGGCCTCAGAAACTTCTTT 1050
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1051 GAAAAATATCCATCATCGCTTGAAGCGCAAGGTCTTGCCGGCGGCGAAAC 1100
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1101 AAAATTGACGGCATGGTTCTGGCCCCCTGAAGCTGAAGCGATGGACTTCC 1150
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1151 GCCATTATTCAAAAGGCACTCACGTTGAAAGCGCATATGAAGGGTTTGCC 1200
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1201 GAAATGAGGTCGACGGCTGTCGGCATTGCCAATACGAGCGAAGTCAACCT 1250
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1251 CGCCTGTTTTTCAAATCCGCCGAGTAATGAAGAGCTGAACAGAGCGGCGG 1300
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1301 ACGAATGGCAAAATCCCCCATTGCTTATTTGTGAGCCTGACTATTATTAT 1350
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1351 GACACCCGCGCTTTGGGTGTTTGGAGCCTGAAAGATAAACGGCGCCCGCT 1400
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1401 CTCAGCTGCGCTTGAAGATCAGCTGGACGAGGCTCTCAAGTTTTACATGA 1450
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1451 ACGAAGTCGAACAGCGGGGCTGGTACGGCTATTGGCATTACGGTGATGTG 1500
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1501 ATGCATACGTACGATGCCGTCCGGCATGTATGGCGGTATGACCTGGGCGG 1550
BSNT_01212 0 -------------------------------------------------- 0
BL03779___yet 1551 CTATGCATGGCAAAACACGGAACTCGTACCGAACCTCTGGCTTTGGCAGT 1600
BSNT_01212 1 -----------------------------------ATGGCAGAAGCCATG 15
|||||||||||.|||
BL03779___yet 1601 CTTTTTTTAGATCCGGGAGGGAAGACATCTTCAGAATGGCAGAAGCGATG 1650
BSNT_01212 16 ACCCGCCATACGAGCGAAACGGACAGCTTTCACCTCGGTGAATACGCAGG 65
||.||.||.||.|||||||..|||.|||..||..||||.||.||...|||
BL03779___yet 1651 ACTCGTCACACTAGCGAAATCGACTGCTACCATTTCGGGGATTATAAAGG 1700
BSNT_01212 66 ACTTGGTTCACGGCATAACGTTGTGCACTGGGGGTGCGGCTGCAAGGAAG 115
.||.||||||.||||.||.||..|.||.|||||.||||||||||||||||
BL03779___yet 1701 CCTCGGTTCAAGGCACAATGTCCTCCATTGGGGCTGCGGCTGCAAGGAAG 1750
BSNT_01212 116 CGAGAATCAGCATGGCCGGGCTTTATAAATTCTATTATTATCTGACGGGT 165
|||||||||||||||||||.||..|.||....|||||||.|.||||||..
BL03779___yet 1751 CGAGAATCAGCATGGCCGGCCTCCACAAGCCTTATTATTTTTTGACGGCG 1800
BSNT_01212 166 GATGAGCGGACGGGAGATCTTTTGACAGAGGTGAAGGATGCCGATTATGC 215
||||||.|.|||||.||..|.||.||.||||||||.|||||||||...||
BL03779___yet 1801 GATGAGAGAACGGGGGAAGTGTTAACCGAGGTGAAAGATGCCGATCGAGC 1850
BSNT_01212 216 CCTCGTCAAAACC--GATCCGATGCGCGCTTTTTA---CGAGAAAGGCAA 260
.|| |.|.|..| |||||||||.|.||.|.||| .||.|||| |
BL03779___yet 1851 GCT--TGAGATGCTTGATCCGATGAGAGCCTATTATCCGGAAAAAG---A 1895
BSNT_01212 261 GCACCCGACTCACGCCAGAACGGGACCGGACTGGGCGGCGTTTTGCTCGA 310
|..|||..|.|||||.|||...||.||.||||||||||||||.||.||.|
BL03779___yet 1896 GTTCCCTGCCCACGCGAGAGTTGGCCCCGACTGGGCGGCGTTCTGTTCCA 1945
BSNT_01212 311 ACTGGCTGGCGGAATGGGAGCGGACCGAAAATCCGGAA---TATCTCAAA 357
|.||||||.||||||||||||||||||...|| ||| ||.||..|.
BL03779___yet 1946 ATTGGCTGACGGAATGGGAGCGGACCGGTGAT---GAAGCGTACCTTGAT 1992
BSNT_01212 358 AAAATCGAAAC--GGGAATCAACTGTCTGAAGTGGCTACCGCTCCGCTTA 405
|||||| ||| |||||||..|.|.||.||...|||.||.||.||..|.
BL03779___yet 1993 AAAATC--AACCGGGGAATCGGCCGGCTCAAAGCGCTGCCTCTTCGTCTG 2040
BSNT_01212 406 TTATCCGGCCCGACATTTGAATATGACCC---GGC----GACCTCGATGC 448
.|.|||||.|||||.||.|.|||.||.|| .|| ||.| |||
BL03779___yet 2041 CTGTCCGGGCCGACTTTCGGATACGATCCTAAAGCTTCAGATC----TGC 2086
BSNT_01212 449 TTCATCACATGGGAGACGG----CATTGCGGGCGGATATCATATGATCAT 494
||||| |||||.||||| ||| |||||.|||||||||.||||
BL03779___yet 2087 TTCAT---ATGGGTGACGGGAATCAT----GGCGGCTATCATATGGTCAT 2129
BSNT_01212 495 TGCCTTCGGCGCGCCGCAAGTGTGGATGGAGCTGGCTGAGCTGCTTGATG 544
.|||||.|||||.||||||...|||||||||||.||.||.|||||.||.|
BL03779___yet 2130 CGCCTTTGGCGCCCCGCAAACATGGATGGAGCTTGCAGAACTGCTGGAGG 2179
BSNT_01212 545 ACCGGGAATGGGAGGATATGCTGAGTAAATTCGGCGAATTTTACACACTC 594
|....||||||.||||.|||||..|..||||||||||||||||....||.
BL03779___yet 2180 ATAACGAATGGAAGGAGATGCTCGGCGAATTCGGCGAATTTTATTTGCTG 2229
BSNT_01212 595 AGTGATGAGGAAAAACGGAAAAAAAGCGGAGGCGCTCTTCATGACAGGCA 644
..||||||.|||||.||.||.|..|||||.||....|||||.|| ..|
BL03779___yet 2230 GCTGATGAAGAAAAGCGCAAGAGGAGCGGCGGGAAGCTTCACGA---TGA 2276
BSNT_01212 645 T---TTTCACTGGCCGATGTTCGCCGCCGGTATGACAGCCTACGCCGCGA 691
| ||||||||||||||||||.||||.|..|||.|.||.||.||.||||
BL03779___yet 2277 TTTATTTCACTGGCCGATGTTCTCCGCTGCCATGGCCGCTTATGCTGCGA 2326
BSNT_01212 692 GAAAAAAACAAGATCCTCATCTCGCCGCCAAAGCGTGGAATCTTTTGCTA 741
|.....|.|||||.|...|.||.||||..|||||.|||...||.|||||.
BL03779___yet 2327 GGCTTCACCAAGACCGGAAGCTTGCCGAAAAAGCATGGCGGCTGTTGCTG 2376
BSNT_01212 742 GATGATAAGCTCAGCCATACGCCGCTTCCGATC------AAACCGGAGCG 785
||.||.||.|..||||||||.|||||.|||||| |||| .||..
BL03779___yet 2377 GACGAAAAACAAAGCCATACACCGCTGCCGATCGCTCCAAAAC--AAGTC 2424
BSNT_01212 786 CAT-CGAG--ACATGGACGCAGCTAGAGGAGCTTCCATGGGTGACAACGA 832
||| ||.| |||.|..|.| |||..|.||.|||||.||.||.|
BL03779___yet 2425 CATGCGTGGAACACGATCAC-------GGAAATCCCTTGGGTCACGACAA 2467
BSNT_01212 833 ACACTGTCTCTCAATGGTGTTTAAATGTCATAGCGGCGCTGGAACTGATC 882
||...|||||.||||||||..|.||....|||||.|.||||||.|||.||
BL03779___yet 2468 ACTGCGTCTCACAATGGTGCCTCAACACAATAGCCGTGCTGGAGCTGCTC 2517
BSNT_01212 883 -CGGATA-ACAGCC------GGAATTTCATAG------------------ 906
.||||| .|.||| |||..|.|| ||
BL03779___yet 2518 AAGGATATGCCGCCTGATCAGGACATGCA-AGAAAAGATCATCAAAGCAA 2566
BSNT_01212 906 -------------------------- 906
BL03779___yet 2567 TGAAAGATCATCCCGCTCGCGTGTGA 2592
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