Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02176 and BL03775
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_02176___ykcA.1.5803.seq
# -bsequence dna-align/BL03775___ykcA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02176___ykcA-BL03775___ykcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02176___ykcA-BL03775___ykcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02176___ykcA
# 2: BL03775___ykcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1017
# Identity: 674/1017 (66.3%)
# Similarity: 674/1017 (66.3%)
# Gaps: 129/1017 (12.7%)
# Score: 2041.0
#
#
#=======================================
BSNT_02176___ 1 ATGAAAGTTAACGGCATTCACCACGTATCGGCATTAACGGCCGACGCACA 50
|||||.||.||.|||||||||||||||||.||.|||||.||..||||.||
BL03775___ykc 1 ATGAACGTAAATGGCATTCACCACGTATCTGCTTTAACAGCAAACGCCCA 50
BSNT_02176___ 51 AAAAAACTTGGATTTCTATAAGAAA-GTATTAGGATTAAAGCTCGTCAAA 99
..|.|||.|||||||||||...||| |..||.|.||.||| ||..|.||.
BL03775___ykc 51 GCATAACCTGGATTTCTATGTCAAAGGGCTTGGCATGAAA-CTGATAAAG 99
BSNT_02176___ 100 AAATCCGTCAATCAGGATGAACCGACCATGTACCATCTGTTCTACGGAGA 149
|||||.|||||||||||.||.||||||||||||||..||||.|||||.||
BL03775___ykc 100 AAATCGGTCAATCAGGACGATCCGACCATGTACCACTTGTTTTACGGGGA 149
BSNT_02176___ 150 TGAAGTGGCAAACCCGGGAACTGAGCTGACGTTTTTCGAGATTCC-CCGC 198
||||||.||....|||||..|.||..||||.|||||||||||||| ..||
BL03775___ykc 150 TGAAGTCGCGTCTCCGGGTTCGGATTTGACATTTTTCGAGATTCCGATGC 199
BSNT_02176___ 199 ATTGCACCGTTTCATGCAGGAACAAACAGTATTTCTTC--TATTGGTTTG 246
||||.|.|...|..|.|||.||.|||.|||||||..| |||...||
BL03775___ykc 200 -TTGCCCGGAGACGGGAAGGGACGAACTGTATTTCGGCCGTATCACTT-- 246
BSNT_02176___ 247 CGCGTCCCAAGCACAGAAGCCCT-GCATTACTGGAAAGAA-CGTTTTGAA 294
||.||.||..|...|.||||.|| |.||| |.|..|||| ||..||.|.
BL03775___ykc 247 CGGGTTCCCGGTGAACAAGCACTCGAATT--TTGGGAGAAGCGGCTTCAT 294
BSNT_02176___ 295 GAGCAGCAAGTAAC-GCACA-------GCGGCATCTCCAAAAGAGCCGGA 336
|||| .| ||||| |||||||| |||.||
BL03775___ykc 295 GAGC--------TCGGCACAGAGATTTGCGGCATC-------GAGACG-- 327
BSNT_02176___ 337 CGT--------GACATAATGGCA--------TTTCAAGATCATGAAGGGC 370
||| || ||| |||..||||||||||||.|
BL03775___ykc 328 CGTGCGGGGCGGA-------GCATTCTCCGCTTTTTAGATCATGAAGGAC 370
BSNT_02176___ 371 AGCGACTTG-TGCTGACTGCTGATGAGGAAGGAAAAGGATATGGCCTGCC 419
|| .||.|| ||.|....||||||||..|.|||||||...||||..||||
BL03775___ykc 371 AG-AACATGATGTTTGTAGCTGATGAAAAGGGAAAAGACCATGGAGTGCC 419
BSNT_02176___ 420 TGTTAAACAGAGCGGCATTCCGGAAGAATTTTCGTTTCGCGGGTTAGGGC 469
|||.|||.|..|||.||||||.||.||...|.|..|..|.|||.|.||.|
BL03775___ykc 420 TGTGAAAAACGGCGTCATTCCTGAGGATGCTGCAATCAGGGGGCTCGGCC 469
BSNT_02176___ 470 CGGTTGAACTGACTGTGCCA--TATGCTGAACCAACTTTACAC----GTA 513
||||.||||||||||| || .|.||.|..||.|| ..| ||.
BL03775___ykc 470 CGGTCGAACTGACTGT--CAGGGACGCCGGTCCGAC----GGCGGCGGTG 513
BSNT_02176___ 514 TTGACGAATATTCTTGGATTTACAGAAATCAGCCGT---GAAC---CAGT 557
.||||..|||||||.||.||| ||.||| |.|.|| |||| |.|.
BL03775___ykc 514 CTGACCGATATTCTCGGCTTT-CATAAA--ATCGGTGAGGAACAGGCTGA 560
BSNT_02176___ 558 CGAA---GGGCAAGGAACCGCCGTT---ATTCTGGAATCAGGAGAAGGCG 601
|||| ||.| ||.||| || ||..|.|||||.||.|||||.|
BL03775___ykc 561 CGAATCCGGCC----AAACGC--TTCACATATTTGAATCGGGTGAAGGAG 604
BSNT_02176___ 602 GTGCTGCAACGGAAATCCATTT--AATAGAAAGA-AACGATCTTCCGC-- 646
|.||.|..|||||..|.|||.| ||.||..||| .||| ||
BL03775___ykc 605 GAGCAGGCACGGAGGTGCATGTGAAACAGTCAGATGACG-------GCAG 647
BSNT_02176___ 647 --GCGAGCGTCAAGGCAAAGGGAGTGTTCACCACGTCGCATTTCGGGTAA 694
|.|||||||..||.|.|||.||.||.||.||.|||||.||.||.||.|
BL03775___ykc 648 AAGAGAGCGTCCCGGAAGAGGAAGCGTCCATCATGTCGCTTTCCGCGTCA 697
BSNT_02176___ 695 GAGATGAAGAAGAACTT--GCCGGGTGGCACCGGATCATCAGCCGCGAA- 741
.|||||||||||||||| || .||||||...|||.||||| .|.|||
BL03775___ykc 698 AAGATGAAGAAGAACTTAAGC--AGTGGCATGAGATAATCAG-TGAGAAC 744
BSNT_02176___ 742 GGCTTTAGCAATTCCGGCATTGTGGAGCGCTACTATTTCAAGGCGCTGTA 791
||||||...|||||.||.||||||||.|||||.|||||.|||||||||||
BL03775___ykc 745 GGCTTTTCGAATTCAGGGATTGTGGAACGCTATTATTTTAAGGCGCTGTA 794
BSNT_02176___ 792 TTTCAGAGAACCGAACGGCATTTTGTTCGAGTTATCAACGGACGGACCGG 841
|||||||||||||||||||||..|.||.||..|.||.||.|||||.||.|
BL03775___ykc 795 TTTCAGAGAACCGAACGGCATACTTTTTGAACTGTCGACTGACGGTCCTG 844
BSNT_02176___ 842 GCTTTATGGTAGATGAAAATC--TTGATGAGCTTGGCCAAACGATCGCTC 889
|||||...||.|||| |||| ||||||||||.|||||||...|.||.|
BL03775___ykc 845 GCTTTGCCGTTGATG--AATCAATTGATGAGCTCGGCCAAAGCCTTGCCC 892
BSNT_02176___ 890 TTCCGCCGTATCTTGAGCATCG-----AAGAGCAGAAATTGAAGCGAAAT 934
|||||||||||||.|||||||| ||||| |||||||||....
BL03775___ykc 893 TTCCGCCGTATCTCGAGCATCGGCGGAAAGAG-----ATTGAAGCGCGGC 937
BSNT_02176___ 935 TGAAACCGATCCAATAA 951
||||||||||||.||||
BL03775___ykc 938 TGAAACCGATCCGATAA 954
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