Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02187 and BL03766
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_02187.1.5803.seq
# -bsequence dna-align/BL03766___ykfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02187-BL03766___ykfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02187-BL03766___ykfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02187
# 2: BL03766___ykfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 983
# Identity: 654/983 (66.5%)
# Similarity: 654/983 (66.5%)
# Gaps: 100/983 (10.2%)
# Score: 2056.5
#
#
#=======================================
BSNT_02187 1 TTGAATTACAAGCCGAAAGCG-CTGAAA--------AAGGGTGATACAGT 41
|||||| |..||| ||.||| |||||.|||||.||
BL03766___ykf 1 TTGAAT---------ATTGCGCCTCAAAGATTAATGAAGGGAGATACGGT 41
BSNT_02187 42 CGGAGTGATCGCGCCCGCAAGTCCGCCGGATCAAAAAAAGCTTGAC---- 87
.||.|||||.|||||.||.||||||||.|.||...|||||||||||
BL03766___ykf 42 TGGTGTGATTGCGCCGGCCAGTCCGCCCGTTCCTGAAAAGCTTGACCGGG 91
BSNT_02187 88 ---ACCGCTCTTTTATTTTTAGAAGAGCTCGGTCTTCAGGTGAAGTTGGG 134
.||| .||||||.|||||||.||.|||.|.||.||..||||
BL03766___ykf 92 CCGTCCG-------GTTTTTAAAAGAGCTTGGACTTGAAGTCAAAGTGGG 134
BSNT_02187 135 CA-----AGGCGCTGAAAAACCAGCACGGCTATTTAGCGGGACAG-GATG 178
| ||.|||.||||.| |||||||||||.||||| .|| ||||
BL03766___ykf 135 -ACGCTCAGCCGCCGAAAGA----CACGGCTATTTGGCGGG-GAGCGATG 178
BSNT_02187 179 ATGAGCGGCTGGCGGATCTCCATGAGATGTTCAGAGACGAGGAGGTAAAA 228
|.|||||.||||.||||||.||.||.|||||...||||.....|||.||.
BL03766___ykf 179 AAGAGCGTCTGGGGGATCTGCACGACATGTTTGAAGACCGTTCGGTTAAG 228
BSNT_02187 229 GCAGTGTTGTGCGCATGCGGGGGTTTTGGGACAGGACGTATCGCCGCGGG 278
||.||..|.||.||.|||||.||||..||.||.|.|||.||.||||.|..
BL03766___ykf 229 GCTGTCATCTGTGCCTGCGGAGGTTACGGAACGGCACGGATTGCCGGGAA 278
BSNT_02187 279 CATTGATTTCAGCTTGATCCGCAAA---CACCCTAAAATCTTTTGGGG-- 323
.|||||.|.|.| |.||..|||| |.|||.|||||.||||||||
BL03766___ykf 279 AATTGACTACCG---GCTCATCAAAAGCCGCCCGAAAATTTTTTGGGGCT 325
BSNT_02187 324 ATACAGCGATATTACGTTTTTACATACTGCCATTCA-TCAAAACACAGGT 372
||.|| |||||.||.|||||||||||.||.| ||| .|||||.||.||.
BL03766___ykf 326 ATTCA--GATATCACTTTTTTACATACAGCGA-TCAGGCAAAATACCGGA 372
BSNT_02187 373 CTTGTCACCTTCCATGGCCCAATGCTCAGCTCGGACATTGGCCTTGACGA 422
|||.|.||.||.||.||.||.||||||||.||.|||||.|||...||.||
BL03766___ykf 373 CTTATTACATTTCACGGACCGATGCTCAGTTCTGACATCGGCAAAGATGA 422
BSNT_02187 423 CGTTCACCCGCTGACAAAAGCG----TCATATAAGCAGCTCTTCCAGGA- 467
|||.||.|||||.|| .|| ||.|.|.|||||||.||.||..|
BL03766___ykf 423 CGTGCATCCGCTTAC----CCGCCGCTCCTTTCAGCAGCTGTTTCAAAAA 468
BSNT_02187 468 --GACGGAATTCACCTATACAGAAGAGCTTTCTCCGCTGACCGCGCTTGT 515
|||| .||.|.||||||||.||.||.||.||..||....||||.||
BL03766___ykf 469 ATGACG---CTCTCTTATACAGAGGAACTGTCGCCTTTGGAAACGCTCGT 515
BSNT_02187 516 TCCTGGAAAAGCGGAAGGCGAGCTTGTCGGGGGAAA--TCTGTCTT-TGC 562
.|..||....||||||||.|||||.|||||.||||| ||..|||| ||.
BL03766___ykf 516 ACACGGCGCGGCGGAAGGGGAGCTCGTCGGCGGAAACCTCGCTCTTCTGG 565
BSNT_02187 563 TGACGTCTACACTGGGCACGCCATTTGAAATTGATACGAGAGGAAAGCTT 612
||||| ||.||.||.|||||.|.||||||||||||||.||||||||||
BL03766___ykf 566 TGACG---ACGCTAGGTACGCCTTATGAAATTGATACGAAAGGAAAGCTT 612
BSNT_02187 613 CTGTTTATTGAAGATATTGACGAGGAGCCTTATCAAATCGACCGAATGCT 662
.|||||||.||.|||.|.||.||.||||||||||.|||||||||.|||||
BL03766___ykf 613 TTGTTTATCGAGGATGTCGATGAAGAGCCTTATCGAATCGACCGGATGCT 662
BSNT_02187 663 AAATCAGTTGAAAATGGCGGGGAAGCTGACGGACGCGGCCGGAATTCTAG 712
.|||||.||.||||||||.|||||..|..|||||||.|||||.||.||..
BL03766___ykf 663 GAATCAATTAAAAATGGCCGGGAAATTATCGGACGCCGCCGGCATCCTGC 712
BSNT_02187 713 TTTGTGATTTTCACAATTGTGTCCCGGTGAAGCGAGAGAAGTCTCTCTCG 762
|.||.||||||||.||.||..|||||...||.||.||.|||||.|||.|.
BL03766___ykf 713 TGTGCGATTTTCATAACTGCATCCCGAAAAAACGCGATAAGTCGCTCACA 762
BSNT_02187 763 CTTGAGCAGGTGCTGGAAGACTATATTATTTCTGCGGGCAGGCCTGCTCT 812
.|..|..||||..|..||||.|||||....||||..||.|..||.||.||
BL03766___ykf 763 TTAAAAGAGGTTTTCCAAGATTATATCGCCTCTGAAGGAAAACCGGCGCT 812
BSNT_02187 813 GAGAGGATTTAAAATCGGCCACTGCTCGCCAAGTATTGCCGTTCCGATCG 862
|...||.||||||||||||||.||.||.||.|.|||.|||||.|||.|.|
BL03766___ykf 813 GTCCGGCTTTAAAATCGGCCATTGTTCACCGAATATCGCCGTACCGGTAG 862
BSNT_02187 863 GTGCGAAAGC--TGCTATGAATACAGCAGAAAAAACAG-TCGTAATAGAG 909
|.|.|||||| |.|| |||...|.|| |||||||.| ||...||.||.
BL03766___ykf 863 GAGTGAAAGCCGTCCT-TGACGCCGGC--AAAAAACGGCTCACCATCGAA 909
BSNT_02187 910 GCGGGCGTTTCAGAAGGGGCGCTGAAGACATGA 942
.||||..||||..||
BL03766___ykf 910 CCGGGAATTTCTTAA------------------ 924
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