Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02187 and BL03766

See Amino acid alignment / Visit BSNT_02187 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_02187.1.5803.seq
#    -bsequence dna-align/BL03766___ykfA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02187-BL03766___ykfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02187-BL03766___ykfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02187
# 2: BL03766___ykfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 983
# Identity:     654/983 (66.5%)
# Similarity:   654/983 (66.5%)
# Gaps:         100/983 (10.2%)
# Score: 2056.5
# 
#
#=======================================

BSNT_02187         1 TTGAATTACAAGCCGAAAGCG-CTGAAA--------AAGGGTGATACAGT     41
                     ||||||         |..||| ||.|||        |||||.|||||.||
BL03766___ykf      1 TTGAAT---------ATTGCGCCTCAAAGATTAATGAAGGGAGATACGGT     41

BSNT_02187        42 CGGAGTGATCGCGCCCGCAAGTCCGCCGGATCAAAAAAAGCTTGAC----     87
                     .||.|||||.|||||.||.||||||||.|.||...|||||||||||    
BL03766___ykf     42 TGGTGTGATTGCGCCGGCCAGTCCGCCCGTTCCTGAAAAGCTTGACCGGG     91

BSNT_02187        88 ---ACCGCTCTTTTATTTTTAGAAGAGCTCGGTCTTCAGGTGAAGTTGGG    134
                        .|||       .||||||.|||||||.||.|||.|.||.||..||||
BL03766___ykf     92 CCGTCCG-------GTTTTTAAAAGAGCTTGGACTTGAAGTCAAAGTGGG    134

BSNT_02187       135 CA-----AGGCGCTGAAAAACCAGCACGGCTATTTAGCGGGACAG-GATG    178
                      |     ||.|||.||||.|    |||||||||||.||||| .|| ||||
BL03766___ykf    135 -ACGCTCAGCCGCCGAAAGA----CACGGCTATTTGGCGGG-GAGCGATG    178

BSNT_02187       179 ATGAGCGGCTGGCGGATCTCCATGAGATGTTCAGAGACGAGGAGGTAAAA    228
                     |.|||||.||||.||||||.||.||.|||||...||||.....|||.||.
BL03766___ykf    179 AAGAGCGTCTGGGGGATCTGCACGACATGTTTGAAGACCGTTCGGTTAAG    228

BSNT_02187       229 GCAGTGTTGTGCGCATGCGGGGGTTTTGGGACAGGACGTATCGCCGCGGG    278
                     ||.||..|.||.||.|||||.||||..||.||.|.|||.||.||||.|..
BL03766___ykf    229 GCTGTCATCTGTGCCTGCGGAGGTTACGGAACGGCACGGATTGCCGGGAA    278

BSNT_02187       279 CATTGATTTCAGCTTGATCCGCAAA---CACCCTAAAATCTTTTGGGG--    323
                     .|||||.|.|.|   |.||..||||   |.|||.|||||.||||||||  
BL03766___ykf    279 AATTGACTACCG---GCTCATCAAAAGCCGCCCGAAAATTTTTTGGGGCT    325

BSNT_02187       324 ATACAGCGATATTACGTTTTTACATACTGCCATTCA-TCAAAACACAGGT    372
                     ||.||  |||||.||.|||||||||||.||.| ||| .|||||.||.||.
BL03766___ykf    326 ATTCA--GATATCACTTTTTTACATACAGCGA-TCAGGCAAAATACCGGA    372

BSNT_02187       373 CTTGTCACCTTCCATGGCCCAATGCTCAGCTCGGACATTGGCCTTGACGA    422
                     |||.|.||.||.||.||.||.||||||||.||.|||||.|||...||.||
BL03766___ykf    373 CTTATTACATTTCACGGACCGATGCTCAGTTCTGACATCGGCAAAGATGA    422

BSNT_02187       423 CGTTCACCCGCTGACAAAAGCG----TCATATAAGCAGCTCTTCCAGGA-    467
                     |||.||.|||||.||    .||    ||.|.|.|||||||.||.||..| 
BL03766___ykf    423 CGTGCATCCGCTTAC----CCGCCGCTCCTTTCAGCAGCTGTTTCAAAAA    468

BSNT_02187       468 --GACGGAATTCACCTATACAGAAGAGCTTTCTCCGCTGACCGCGCTTGT    515
                       ||||   .||.|.||||||||.||.||.||.||..||....||||.||
BL03766___ykf    469 ATGACG---CTCTCTTATACAGAGGAACTGTCGCCTTTGGAAACGCTCGT    515

BSNT_02187       516 TCCTGGAAAAGCGGAAGGCGAGCTTGTCGGGGGAAA--TCTGTCTT-TGC    562
                     .|..||....||||||||.|||||.|||||.|||||  ||..|||| ||.
BL03766___ykf    516 ACACGGCGCGGCGGAAGGGGAGCTCGTCGGCGGAAACCTCGCTCTTCTGG    565

BSNT_02187       563 TGACGTCTACACTGGGCACGCCATTTGAAATTGATACGAGAGGAAAGCTT    612
                     |||||   ||.||.||.|||||.|.||||||||||||||.||||||||||
BL03766___ykf    566 TGACG---ACGCTAGGTACGCCTTATGAAATTGATACGAAAGGAAAGCTT    612

BSNT_02187       613 CTGTTTATTGAAGATATTGACGAGGAGCCTTATCAAATCGACCGAATGCT    662
                     .|||||||.||.|||.|.||.||.||||||||||.|||||||||.|||||
BL03766___ykf    613 TTGTTTATCGAGGATGTCGATGAAGAGCCTTATCGAATCGACCGGATGCT    662

BSNT_02187       663 AAATCAGTTGAAAATGGCGGGGAAGCTGACGGACGCGGCCGGAATTCTAG    712
                     .|||||.||.||||||||.|||||..|..|||||||.|||||.||.||..
BL03766___ykf    663 GAATCAATTAAAAATGGCCGGGAAATTATCGGACGCCGCCGGCATCCTGC    712

BSNT_02187       713 TTTGTGATTTTCACAATTGTGTCCCGGTGAAGCGAGAGAAGTCTCTCTCG    762
                     |.||.||||||||.||.||..|||||...||.||.||.|||||.|||.|.
BL03766___ykf    713 TGTGCGATTTTCATAACTGCATCCCGAAAAAACGCGATAAGTCGCTCACA    762

BSNT_02187       763 CTTGAGCAGGTGCTGGAAGACTATATTATTTCTGCGGGCAGGCCTGCTCT    812
                     .|..|..||||..|..||||.|||||....||||..||.|..||.||.||
BL03766___ykf    763 TTAAAAGAGGTTTTCCAAGATTATATCGCCTCTGAAGGAAAACCGGCGCT    812

BSNT_02187       813 GAGAGGATTTAAAATCGGCCACTGCTCGCCAAGTATTGCCGTTCCGATCG    862
                     |...||.||||||||||||||.||.||.||.|.|||.|||||.|||.|.|
BL03766___ykf    813 GTCCGGCTTTAAAATCGGCCATTGTTCACCGAATATCGCCGTACCGGTAG    862

BSNT_02187       863 GTGCGAAAGC--TGCTATGAATACAGCAGAAAAAACAG-TCGTAATAGAG    909
                     |.|.||||||  |.|| |||...|.||  |||||||.| ||...||.||.
BL03766___ykf    863 GAGTGAAAGCCGTCCT-TGACGCCGGC--AAAAAACGGCTCACCATCGAA    909

BSNT_02187       910 GCGGGCGTTTCAGAAGGGGCGCTGAAGACATGA    942
                     .||||..||||..||                  
BL03766___ykf    910 CCGGGAATTTCTTAA------------------    924


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