Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02188 and BL03765
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_02188___ykfB.1.5803.seq
# -bsequence dna-align/BL03765___ykfB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02188___ykfB-BL03765___ykfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02188___ykfB-BL03765___ykfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02188___ykfB
# 2: BL03765___ykfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1166
# Identity: 778/1166 (66.7%)
# Similarity: 778/1166 (66.7%)
# Gaps: 154/1166 (13.2%)
# Score: 2430.5
#
#
#=======================================
BSNT_02188___ 1 ATGAAAATCATT--CGA-AT--CGAAACAAGCCGAATCGCAATTCCGCTG 45
||||| .||| ||| || || ||||.|||.|||||..||||||||
BL03765___ykf 1 ATGAA---GATTGCCGAGATTACG--ACAAACCGCATCGCCGTTCCGCTG 45
BSNT_02188___ 46 ACAAAGCCGTTTAAAACCGCGCTTCGCACTGTGTATACGGCTGAATCAGT 95
|.|||.||.||||||||.||||||||.||.||....||.||.|||.|.||
BL03765___ykf 46 AAAAAACCTTTTAAAACAGCGCTTCGAACCGTCCGCACCGCAGAAGCCGT 95
BSNT_02188___ 96 CATAGT--AAGGATTACTTATGACAGCGG--TG-CAGTCGGATGGGGAGA 140
|||.|| ||| |.||...|||.|.||| || || ||.||||||||
BL03765___ykf 96 CATTGTCAAAG--TAACGGCTGAAAACGGGATGACA---GGCTGGGGAGA 140
BSNT_02188___ 141 AGCACCCCCGAC-GTTAGTGATTACAG--GAGACAGCATGGATAGCATTG 187
|||.||.||||| |.| ||.|||||.| ||||| || |.||.||.||||
BL03765___ykf 141 AGCGCCTCCGACTGCT-GTTATTACCGGTGAGAC-GC-TTGACAGTATTG 187
BSNT_02188___ 188 AAAGTGCCATTCACAATGTTT-------------TAAAACCG---GCA-- 219
|.|.|.||.|||..|.|.|| | .|||| |||
BL03765___ykf 188 -AGGGGGCAGTCAACACGATTCTCGCACCCGCCCT--CACCGGGTGCAAC 234
BSNT_02188___ 220 TTGCTTGGAAAAAGCCTGGCGGGCTATGAGGCCATTCTGCACGACATCCA 269
|||| ||| |||| ||||||.||..|.||.||.|||.|
BL03765___ykf 235 TTGC---GAA------TGGC------TGAGGCGATATTTCATGATATCGA 269
BSNT_02188___ 270 GCATCTTCTTACAGGAAATATGAGCGCGAAGGCTGCTGTAGAAATGGCTC 319
..|.||..||...|||||||..|||||.|||||.||||||||||..||..
BL03765___ykf 270 CAAGCTGATTGTTGGAAATACAAGCGCAAAGGCCGCTGTAGAAACAGCCG 319
BSNT_02188___ 320 TATACGACGGCTGGGCGCAGATGTGCGGGCTGCCGCTTTATCAAATGCTT 369
|.|||||..|||.|||||||.|.|||||.||.||.||.||||||.||||.
BL03765___ykf 320 TCTACGATTGCTTGGCGCAGCTTTGCGGTCTTCCCCTGTATCAATTGCTG 369
BSNT_02188___ 370 GGCGGATA---TCGAGATACACTGGAAACAGATTATACCGTCAGTGTCAA 416
|||||||| .||.||.| |.||.||.||||.|||||||||.|||||
BL03765___ykf 370 GGCGGATACAGACGGGAGA---TCGAGACGGATTTTACCGTCAGCGTCAA 416
BSNT_02188___ 417 CTCA-CCTGAAGAGATG---------GCAGCTGATGCCGAGAATTATCTC 456
|.| ||.|||||.||| ||.|| ||| .|||.|.
BL03765___ykf 417 -TGACCCGGAAGAAATGGGGAAAGACGCGGC-----CCG----CTATGTA 456
BSNT_02188___ 457 AAACAAGGCTTTCAAACGCTGAAAATAAAGGTCGGAAAAGATGATATTGC 506
.|..||||.||||..|||||.|||||.|||||.||||||.|.||.||.||
BL03765___ykf 457 CAGGAAGGGTTTCGCACGCTCAAAATTAAGGTTGGAAAAAACGACATGGC 506
BSNT_02188___ 507 AACAGATATCGCCCGTATCCAGGAAATCAGAAAACGTGTCGGAT-CAGCT 555
||||||..|||..||.|||..|||||||.|.||||..| |||.| |.|||
BL03765___ykf 507 AACAGACCTCGAACGGATCAGGGAAATCCGCAAACAAG-CGGGTCCCGCT 555
BSNT_02188___ 556 GT--GAAACTGCGTTTAGACGCTAATCAGGGGTGGAGGCCGAAGGAAGCG 603
|| |||.|.||| |.|||||.|||||.||.||||.|.||||..|.|||
BL03765___ykf 556 GTCCGAATCCGCG--TGGACGCCAATCAAGGCTGGACGGCGAAACAGGCG 603
BSNT_02188___ 604 GTAACTGCCATTCGGAAAATGGAGGATGCGGGTCTAGGCATTGAGCTTGT 653
||.|..||||||||||||||||||||||.|||.||....||.||||||||
BL03765___ykf 604 GTCAAAGCCATTCGGAAAATGGAGGATGAGGGGCTTTCGATCGAGCTTGT 653
BSNT_02188___ 654 CGAGCAGCCTGTCCA-----TAAAGACGATCTCGCTGGGCTT-AAAAAGG 697
|||.|||||.||||| | |||||||| ..||||| |||.|||
BL03765___ykf 654 CGAACAGCCGGTCCACCGGCT-----CGATCTCG-AAGGCTTGAAACAGG 697
BSNT_02188___ 698 TGACAGATGCAACAGATACGCCGATTATGGCTGATGAAAGTGTTTTTACA 747
||||||||||....|||||||||||||||||.||.|||||.||.|||||.
BL03765___ykf 698 TGACAGATGCCGTCGATACGCCGATTATGGCGGACGAAAGCGTGTTTACC 747
BSNT_02188___ 748 CCGCGCCAGGCGTTCGAAGTTCTGCAAACCCGGAGCGCAGACTTGATCAA 797
||..|..|.||.||..|.||.|||.||||..|.|||||.||..|.|||||
BL03765___ykf 748 CCAAGGGATGCTTTTCACGTGCTGAAAACGAGAAGCGCCGATCTCATCAA 797
BSNT_02188___ 798 TATTAAATTGATGAAAGCGGGCGGCATCAGC--GGAGCAGAGAAAATTAA 845
|||||||.|||||||.||.|||||||||.|| ||.|| .||||||.||
BL03765___ykf 798 TATTAAACTGATGAAGGCAGGCGGCATCCGCCAGGCGC--TGAAAATCAA 845
BSNT_02188___ 846 TGCTATGGCGGAGGCCTGCGGGGTGGAGTGTATGGTCGGCAGCATGATCG 895
.||.|||||.||.||.|||||.|||||.||.||||.|||.||||||||||
BL03765___ykf 846 CGCCATGGCAGAAGCGTGCGGAGTGGAATGCATGGCCGGAAGCATGATCG 895
BSNT_02188___ 896 AAACGAAGCTGGGCATTACGGCCGCGGCGCATTTTGCGGCAAGCAAGAGA 945
|.||.|.|||.|||||.||.||.||.|..||.||.||.||||||.|||.|
BL03765___ykf 896 AGACAAGGCTCGGCATCACAGCGGCCGTCCACTTCGCAGCAAGCCAGAAA 945
BSNT_02188___ 946 AACATCACACGCTTTGATTTTGACGCGCCGCTGATGCTGAAAACAGATGT 995
||..|.|||...||.||||||||.||||||||.||||||||....|||.|
BL03765___ykf 946 AATGTGACAAAATTCGATTTTGATGCGCCGCTCATGCTGAAGGAGGATAT 995
BSNT_02188___ 996 ATTCAAAGGCGGCA-----TAACATATAGCGGCA-GTACGATTTCGATGC 1039
..|..||||||||| ||.||| ||| |.|||||..||||.|
BL03765___ykf 996 CGTTGAAGGCGGCATCCGCTATCAT------GCAGGAACGATCACGATAC 1039
BSNT_02188___ 1040 CTG--GCAAACCGGGCCTCGGAATCACCGGGA----CTGCGCTTTGA--- 1080
|.| || .||.||.||||||||||| || || ||..|||
BL03765___ykf 1040 CGGATGC--TCCCGGACTCGGAATCAC---GAAAGTCT--GCCATGAGGG 1082
BSNT_02188___ 1080 ---------------- 1080
BL03765___ykf 1083 GGGAGAGGACAAATGA 1098
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