Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02190 and BL03763
See
Amino acid alignment /
Visit
BSNT_02190 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_02190___ykfD.1.5803.seq
# -bsequence dna-align/BL03763___ykfD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02190___ykfD-BL03763___ykfD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02190___ykfD-BL03763___ykfD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02190___ykfD
# 2: BL03763___ykfD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity: 738/1072 (68.8%)
# Similarity: 738/1072 (68.8%)
# Gaps: 140/1072 (13.1%)
# Score: 2520.0
#
#
#=======================================
BSNT_02190___ 1 ATGACGCCA---CTGC-CTTTGTTAGAGGTCAGCCAGCTAAAAATGCATT 46
||| || |.|| ||||.||..|.|||||||..||.||||||||.|
BL03763___ykf 1 ATG----CAAACCGGCGCTTTATTGAAAGTCAGCCGTCTGAAAATGCACT 46
BSNT_02190___ 47 TTGACGCAGGGAAAAAGCGG----ACAGTCAAAGCCGTCGACGGGGTCAC 92
|||||||.|| |||.|| ||.||||||||.||||||||..|..|
BL03763___ykf 47 TTGACGCCGG----AAGGGGCAAAACGGTCAAAGCGGTCGACGGCATTTC 92
BSNT_02190___ 93 CTTTCAGATTCGTGAAGGAGAAACGTTCGGGCTAGTCGGGGAATCAGGGT 142
.|||.|.|||...||||||||.|||||||||||.|||||.|||||.||.|
BL03763___ykf 93 ATTTGATATTAAAGAAGGAGAGACGTTCGGGCTCGTCGGAGAATCGGGCT 142
BSNT_02190___ 143 GCGGGAAATCAACCTTGGGGAGAGTGCTGATGCGCCTTTATCAGCCGACA 192
||||.||.||.||.|..||.||||||||||||||.|||||||||||||||
BL03763___ykf 143 GCGGCAAGTCGACATCCGGAAGAGTGCTGATGCGTCTTTATCAGCCGACA 192
BSNT_02190___ 193 GAAGG-AAGCGTGACATACCGCGGCACAAATCTTCAT-----------GC 230
||||| .|| ||.|||||.||.||.|.||| ||| ||
BL03763___ykf 193 GAAGGCGAG-GTTACATATCGGGGGAAAAA----CATCCACCATTTGAGC 237
BSNT_02190___ 231 GCTGAGTGAAAAAGAGCAGTTTGCCTTCAACCGCAAACTGCAGATGATTT 280
|.||| ||||..|...||| |.||||||||||.|.||.|||||||
BL03763___ykf 238 GATGA-TGAATCATTCCAG------TACAACCGCAAAATTCAAATGATTT 280
BSNT_02190___ 281 TTCAGGACCCCTATGCTTCACTTAACCCGCGCATGACCGTTCGAGAAATT 330
||||.|||||.|||||||||.|.||.|||.|..|.|||||..|.||.|||
BL03763___ykf 281 TTCAAGACCCGTATGCTTCATTAAATCCGAGGTTAACCGTCAGGGAGATT 330
BSNT_02190___ 331 ATTTTGGAGCCGATGGAGATTCACAATCTCTAC-------AATACCCATA 373
||....||.||.|||||.||.|||...|||||| || |
BL03763___ykf 331 ATGACAGAACCTATGGAAATCCACGGCCTCTACGGAGGGAAA-------A 373
BSNT_02190___ 374 AAGCGCGGCTT-------CTCGTCGTGGACGAGCTGCTTGAGGCAGTTGG 416
|.|||||.||| | |||||||||.||.||.|||||.||
BL03763___ykf 374 AGGCGCGTCTTGAAAAGGC-------GGACGAGCTTCTGGAAGCAGTCGG 416
BSNT_02190___ 417 GCTTCATCCCGA---TTTTGGCAGCCGTTATCCGCATGAATTCAGCGGCG 463
.||.|| |.| .||||.||..||.|||||.||||||||||||||||
BL03763___ykf 417 TCTGCA---CAAAAGCTTTGCCAATCGCTATCCTCATGAATTCAGCGGCG 463
BSNT_02190___ 464 GGCAAAGGCAGAGAATCGGGATTGCCAGAGCACTGTCGC-TGAATCCTGA 512
|.||.|||||.||||||||.||.||||||||.||..||| |||| |||||
BL03763___ykf 464 GACAGAGGCAAAGAATCGGCATCGCCAGAGCGCTTGCGCTTGAA-CCTGA 512
BSNT_02190___ 513 ATTTATCGTGGCGGACGAACCGATTTCTGCACTTGATGTCTCTGTTCAAG 562
|||.|||||.||.||.||.|||||.||.||||||||.|||||.||.||||
BL03763___ykf 513 ATTCATCGTCGCCGATGAGCCGATATCGGCACTTGACGTCTCCGTGCAAG 562
BSNT_02190___ 563 CGCAGGTGGTCAACCTGCTGAAGCGGCTTCAAAAAGAGAAAGGGCTAACG 612
|||||||.||||||||..|.||...|||.|||||.||.||||||||.|||
BL03763___ykf 563 CGCAGGTCGTCAACCTTTTAAAAAAGCTGCAAAAGGAAAAAGGGCTCACG 612
BSNT_02190___ 613 TTTTTATTCATTGCCCATGATCTTTCGATGGTGAAGCATATCAGTGACAG 662
||||||||.||.|||||.||||||||.|||||||||||.|||||.|||.|
BL03763___ykf 613 TTTTTATTTATCGCCCACGATCTTTCCATGGTGAAGCACATCAGCGACCG 662
BSNT_02190___ 663 GATCGGTGTCATGTACTTAGGGCACATGATGGAAATTACAGAGAGCGGCA 712
||||||.||||||||..|.|||||||||.|.||.||.||.||.||||||
BL03763___ykf 663 GATCGGCGTCATGTATCTCGGGCACATGGTCGAGATCACCGACAGCGGC- 711
BSNT_02190___ 713 C--CTTGTATCGTGAACCGCTCCATCCCTATACAAAGGCGCTTTTGTCCT 760
| ||| ||||..|||||.||.|||||.||.||..||||||||||.||..
BL03763___ykf 712 CGGCTT-TATCAAGAACCTCTGCATCCTTACACCCAGGCGCTTTTATCAG 760
BSNT_02190___ 761 CGATTCCCATTCCAGATCCTGAATTGGAGGACAAGCGTGAG-CGTATTCT 809
|.||.||.|||||.|||||.||..||||.|||||||| ||| ||.||..|
BL03763___ykf 761 CTATCCCGATTCCCGATCCGGATGTGGAAGACAAGCG-GAGACGAATCAT 809
BSNT_02190___ 810 CTTAAAAGGAGAGCTGCCGAGCCCGGTCAATCCGCCAAGCGGCTGCGTGT 859
..|.|||||.||||||||.||.|||.||.|||||||.||||||||||| |
BL03763___ykf 810 ACTGAAAGGCGAGCTGCCAAGTCCGATCGATCCGCCGAGCGGCTGCGT-T 858
BSNT_02190___ 860 TTC-GGACCCGCTGTCCGGAGGCGATGCCTGA-ATGTGGGGAATCCCGTC 907
||| |.||..|.|||||.|..|||||| || ||.|| ||.|
BL03763___ykf 859 TTCAGAACGAGGTGTCCTGCCGCGATG---GACATTTG--------CGCC 897
BSNT_02190___ 908 CCCA----------GCTTCAAGAAATCGAACCCGGCCGTTTTGTCGCTTG 947
.||| |.|..|||||..|||...|||.|.|||||||||.||
BL03763___ykf 898 GCCAAAAAGCCGATGTTAAAAGAAGCCGACGACGGTCATTTTGTCGCCTG 947
BSNT_02190___ 948 CCATCTGTATCGAAATGCTGAAACG-AAGGAAAAAG----------TG-A 985
|||||||||| || |.||.||| |||||||.|| || |
BL03763___ykf 948 CCATCTGTAT-GA----CGGAGACGCAAGGAAAGAGGAGGCCGGCTTGAA 992
BSNT_02190___ 986 GATAA----------------- 990
|.|.|
BL03763___ykf 993 GGTGACGCTGCAGGCGAGGTGA 1014
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.