Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02195 and BL03762

See Amino acid alignment / Visit BSNT_02195 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_02195___ykhA.1.5803.seq
#    -bsequence dna-align/BL03762___ykhA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02195___ykhA-BL03762___ykhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02195___ykhA-BL03762___ykhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02195___ykhA
# 2: BL03762___ykhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 534
# Identity:     390/534 (73.0%)
# Similarity:   390/534 (73.0%)
# Gaps:          30/534 ( 5.6%)
# Score: 1405.0
# 
#
#=======================================

BSNT_02195___      1 ----ATGGAAACACCGGAAACAAGATTTTGTAAAGAGTCAAAGGTTGTGA     46
                         ||||    |||.||||..||||..||.|||||.|||||.|||||.|
BL03762___ykh      1 ATGAATGG----ACCTGAAAAGAGATACTGCAAAGAATCAAAAGTTGTCA     46

BSNT_02195___     47 AAACCAGCAGGGTGTTCCCGCTTGACACGAACAACCATAATACGCTGTTT     96
                     ||||.||||||||.||.||||||||.||||||||.||.||.||..||||.
BL03762___ykh     47 AAACAAGCAGGGTATTTCCGCTTGATACGAACAATCACAACACCTTGTTC     96

BSNT_02195___     97 GGCGGAAAATTAATGAGCTACATCGATGACATTGCCTCTATTTCCGCGGC    146
                     |||||.||..|.||||||||.|||||.||.||.||.||.|||||.||.||
BL03762___ykh     97 GGCGGCAAGCTGATGAGCTATATCGACGATATCGCTTCGATTTCGGCAGC    146

BSNT_02195___    147 GCGCCATTGCAGACGTGAAACCGTAACGGCTTCAATGGATTCTGTAGATT    196
                     |.|.||.|..||..||||||||||.||.||||||||||||||.||.||||
BL03762___ykh    147 GAGACACTCGAGGTGTGAAACCGTGACAGCTTCAATGGATTCCGTCGATT    196

BSNT_02195___    197 TTTTAAAGCCGATCGGGCAAAAGGATTCTGTCTGCCTAGAGTCCTATGTG    246
                     ||.|..|.||||||.|.||..|||||||.||||||||.||.||.||||||
BL03762___ykh    197 TTCTCGAACCGATCCGCCAGGAGGATTCAGTCTGCCTTGAATCTTATGTG    246

BSNT_02195___    247 ACATGGGTCGGCACATCTTCTATGGAAGTATTTGTGAAAGTCATTAAGGA    296
                     |||||||||||||.|.|.||.|||||.|||||.||.|||||||||||.||
BL03762___ykh    247 ACATGGGTCGGCAGAACGTCAATGGAGGTATTCGTCAAAGTCATTAAAGA    296

BSNT_02195___    297 GCATTTGATGACTGGCGAACGGGAACTCGCTGCCACATCCTTTTTGACAT    346
                     |||||||.||||.||||||||..|.||.||.||.|||||||||||.||.|
BL03762___ykh    297 GCATTTGCTGACAGGCGAACGAAAGCTTGCGGCGACATCCTTTTTAACCT    346

BSNT_02195___    347 TTGTCGCATTAGATTCA-AATGGCAA-------GCCGGTGCCTGTACCGA    388
                     ||||.||..|.|| ||| .|.|||||       ||||.|.|     ||.|
BL03762___ykh    347 TTGTGGCGCTTGA-TCAGGACGGCAATCCTCAGGCCGTTCC-----CCAA    390

BSNT_02195___    389 GGGTTGTACCGGAAACAGAAGAAGAAATCATGCTTCATAATACAGCAGTA    438
                       |||||||||.|..|.|||||||||||||||||.||..|.||.||....
BL03762___ykh    391 --GTTGTACCGCAGTCTGAAGAAGAAATCATGCTGCACGAGACCGCCCGG    438

BSNT_02195___    439 CAGCGCGCTAATGAACGAAAGAAC---CGCAAGAAGCACAGCCAGGCGCT    485
                     ||||||||..|.|||||.||.|||   |||   ||.||||||.|.|||||
BL03762___ykh    439 CAGCGCGCCGAAGAACGGAAAAACCATCGC---AAACACAGCAAAGCGCT    485

BSNT_02195___    486 TGCAAATGCGCTCGGAACTGATAAGCCTTGGTGA    519
                     .||..|.|||||.|....|||.||.|||||||.|
BL03762___ykh    486 GGCCCAGGCGCTGGCTGTTGACAAACCTTGGTAA    519


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