Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02199 and BL03756
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_02199___ykkA.1.5803.seq
# -bsequence dna-align/BL03756___ykkA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02199___ykkA-BL03756___ykkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02199___ykkA-BL03756___ykkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02199___ykkA
# 2: BL03756___ykkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity: 342/615 (55.6%)
# Similarity: 342/615 (55.6%)
# Gaps: 180/615 (29.3%)
# Score: 921.5
#
#
#=======================================
BSNT_02199___ 1 ---------ATGAAGGACTTA--TCCATAAGAAACGACATGGCGCCAACG 39
.||||.||.||| ||||.|.||| ||.||||||||.||.
BL03756___ykk 1 ATGCCGTTTTTGAAAGATTTATCTCCAGATGAA--GAGATGGCGCCGACA 48
BSNT_02199___ 40 GTCAGTCTGCTGTATTCCGCAGTGGAAGAAAACAGTCTC---CGTCTGGC 86
|||.|.|||||.|.|||.||.||..|.||||||| || ||.|||..
BL03756___ykk 49 GTCGGGCTGCTTTTTTCGGCGGTCAATGAAAACA---TCGAACGGCTGAA 95
BSNT_02199___ 87 TTCTATCG---------TAAGCCATATGACACACAGTGAA---CTTTACT 124
.||.|||| |.|||| |.||| ||..|.|
BL03756___ykk 96 ATCAATCGTCTCCGGCATCAGCC------------GGGAAGAGCTGGAAT 133
BSNT_02199___ 125 ATAAGGG-GCGC-TGCCAAACAAAAAACAGCACGGCTCAGCTTTTGCACC 172
||||||| |.|| ||.|.| .||||||||||..||.|||||..|..|.|
BL03756___ykk 134 ATAAGGGTGAGCATGGCGA--CAAAAACAGCATCGCCCAGCTGATCTATC 181
BSNT_02199___ 173 ATATCACAAATGTTGATATCAGATGGGT---CTGGCGTATCAAGGAAAAT 219
||.|.|..|||||.|||.||.|.||||| |.||| |.||||||
BL03756___ykk 182 ATTTAATCAATGTCGATGTCCGCTGGGTTTACAGGC---TGAAGGAA--- 225
BSNT_02199___ 220 CGGATACCGAACCATATT------------GAACAGACATACGGCCCGAT 257
|.|||| ||| |||.|||.||||||.|||||
BL03756___ykk 226 -----AGCGAA----ATTCCAAGAGAGCTGGAAGAGAAATACGGACCGAT 266
BSNT_02199___ 258 GACAGATGAAAGCGGACGGCTGCCTGTACCGGTGAATCAG----CCAGAC 303
|||.|||||||.||||||..||||.| .||||| ||| || |
BL03756___ykk 267 GACGGATGAAAACGGACGTTTGCCGG---AGGTGA--CAGGCGTCC---C 308
BSNT_02199___ 304 TTAGATGAACTCC-TGAAAAGACATC----AGCATGTAGTAGAGGAGCTG 348
||.|| || ||..| ||| .|||| |.|||||.||||
BL03756___ykk 309 TTTGA------CCGTGTTA----ATCGAGTGGCAT---GAAGAGGTGCTG 345
BSNT_02199___ 349 AAATCGGTATGCTTCACTTTAACAGA-----AAATGCTTT---GAACCAG 390
|..||| ||.| ||||.| |||.||||| |||..||
BL03756___ykk 346 -----GAGATG-TTGA----AACACACCGCTAAAGGCTTTTCGGAAAAAG 385
BSNT_02199___ 391 CCGCTTTCCT-TCGAAGGTGACACCG----------------CGACGATA 423
.| ||.|| ..|||||| .||| |||||||.
BL03756___ykk 386 AC---TTGCTGAAGAAGGT---TCCGTATGAGGGAGGGTTTTCGACGATC 429
BSNT_02199___ 424 CGATGGGGAATTTGGCATATGGCAGATCATAACCGCTATCATCAGGCACA 473
||.|||||.||.|||||||||.|.|||||||||||||||||.|||||.||
BL03756___ykk 430 CGCTGGGGGATCTGGCATATGTCTGATCATAACCGCTATCACCAGGCGCA 479
BSNT_02199___ 474 TATTGAAGCTCTCAAAAAAGA-------ATG-GAAGCAG--GATGTGGCG 513
||||.|.|||..|..|||||| ||| .||.||| ||
BL03756___ykk 480 TATTCAGGCTTGCTTAAAAGAGTTCCGCATGCAAAACAGTTGA------- 522
BSNT_02199___ 514 AAGTATGAACGCTAA 528
BL03756___ykk 522 --------------- 522
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