Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02203 and BL03754

See Amino acid alignment / Visit BSNT_02203 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_02203___ykkD.1.5803.seq
#    -bsequence dna-align/BL03754___ykkD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02203___ykkD-BL03754___ykkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02203___ykkD-BL03754___ykkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02203___ykkD
# 2: BL03754___ykkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 331
# Identity:     227/331 (68.6%)
# Similarity:   227/331 (68.6%)
# Gaps:          29/331 ( 8.8%)
# Score: 758.0
# 
#
#=======================================

BSNT_02203___      1 ATGCTGCACTGGATCAG-TTTATTGTGCGCGGGCTGTTTA---GAAATGG     46
                        .||.|.||||||.| .|.||    |||.|.|.||.||   ||||||.
BL03754___ykk      1 ---ATGGAATGGATCTGCCTCAT----CGCCGCCGGTATACTGGAAATGC     43

BSNT_02203___     47 CCGGCGTGGCCCTTATGAATCAATATGCGAAAGAAAAAAGCGTGAAATGG     96
                     ..||||||.|..|.|||||.||.|.|...|||||.||..|.||||.||||
BL03754___ykk     44 TTGGCGTGACGATGATGAACCAGTTTCATAAAGACAAGCGGGTGAGATGG     93

BSNT_02203___     97 GTGC----TGTTGATCATTGTTGGTTTTGCCGCTTCATTTTCCTTGCTGT    142
                     .| |    |||||||||   |.||.|||||||||||.||||.||||||.|
BL03754___ykk     94 AT-CTTTTTGTTGATCA---TCGGGTTTGCCGCTTCTTTTTTCTTGCTTT    139

BSNT_02203___    143 CGTACGCAATGGAAACCATTCCGATGGGAACGGCTTACGCCGTCTGGACA    192
                     |....||.|||||.||..|.|||||||||||.||.|||||.||.||||||
BL03754___ykk    140 CCCTTGCGATGGAGACGCTGCCGATGGGAACCGCGTACGCAGTGTGGACA    189

BSNT_02203___    193 GGAATTGGCACCGCCGGCGGGGCGCTTGTCGGCATCCTCTTTTACAAGGA    242
                     ||.||.|||||.|.|||.||.|||||||||||||||||.||||||...||
BL03754___ykk    190 GGGATCGGCACGGTCGGAGGTGCGCTTGTCGGCATCCTGTTTTACGGAGA    239

BSNT_02203___    243 GCAGAAAGACGCCAAACGGATCTTCTTTATCGCGTTGATTTTATGCTCAG    292
                     ||.||||||||..|||||.|||||.||.||||||.|.|||||..|.||.|
BL03754___ykk    240 GCCGAAAGACGGAAAACGCATCTTTTTCATCGCGCTCATTTTGGGATCTG    289

BSNT_02203___    293 CGGTTGGTTTGAAAATTCTGTCATAA-----    318
                     |.||.||..|||||.||     ||.|     
BL03754___ykk    290 CCGTCGGGCTGAAACTT-----ATTAGCTAG    315


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