Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02174 and BL03743
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_02174___ykbA.1.5803.seq
# -bsequence dna-align/BL03743___ykbA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02174___ykbA-BL03743___ykbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02174___ykbA-BL03743___ykbA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02174___ykbA
# 2: BL03743___ykbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1389
# Identity: 982/1389 (70.7%)
# Similarity: 982/1389 (70.7%)
# Gaps: 132/1389 ( 9.5%)
# Score: 3383.0
#
#
#=======================================
BSNT_02174___ 1 ATGCATTCTGAAGACAACGGTTTGAAAAAAGAGATAGGCCTCTTGTTTGC 50
|||.||.|.||||..|||||..|.|||||||||||||||.|.||.|||||
BL03743___ykb 1 ATGAATGCAGAAGCAAACGGACTAAAAAAAGAGATAGGCTTGTTATTTGC 50
BSNT_02174___ 51 CCTTACTCTTGTCATCGGAACCATTATCGGTTCTGGTGTTTTTATGAAGC 100
.||..|||||||.||.|||||.||.||||||||.||.||.||||||||||
BL03743___ykb 51 GCTATCTCTTGTGATTGGAACGATCATCGGTTCCGGCGTGTTTATGAAGC 100
BSNT_02174___ 101 CCGGC-GCTGTGCTTGCTTATTCAGGCGATTCAAAAATGGCGCTTTTCGC 149
||||| || ||||||.|.|||||.||..|..||.||||.||.||||||||
BL03743___ykb 101 CCGGCAGC-GTGCTTTCCTATTCCGGAAACGCACAAATCGCTCTTTTCGC 149
BSNT_02174___ 150 CTGGCTGTTAGGCGGTATTTTAACACTGGCGGGCGGTTTGACAATCGCGG 199
||||||..|.|||||.||.||.||.||.||.|||||..||||.|||||.|
BL03743___ykb 150 CTGGCTTCTCGGCGGAATCTTGACGCTTGCCGGCGGGCTGACCATCGCTG 199
BSNT_02174___ 200 AAATCGGAACGCAGATTCCAAAAACCGGCGGGCTTTATACGTACCTTGAA 249
||.|.||..|.||||||||.|||||.|||||.|||||.||.||.||||||
BL03743___ykb 200 AACTGGGCGCACAGATTCCGAAAACAGGCGGTCTTTACACATATCTTGAA 249
BSNT_02174___ 250 GAAGTGTACGGCGAGTTTTGGGGATTTTTGTGCGGCTGGGTGCAGATTAT 299
|||.|.|||||||||||.|||||.||.||.|||||||||||||||||.||
BL03743___ykb 250 GAAATTTACGGCGAGTTCTGGGGCTTCTTATGCGGCTGGGTGCAGATCAT 299
BSNT_02174___ 300 CATTTACGGCCCGGCGATTATTGGCGCGCTGGGTTTATATTTTGGATCTT 349
|||.|||||.|||||.||.||.|||||.||.||.||||||||.||.||..
BL03743___ykb 300 CATCTACGGACCGGCCATCATCGGCGCACTTGGATTATATTTCGGCTCGC 349
BSNT_02174___ 350 TAATGGCGAA--TCTTTTCGGCTGGGGAT-----CTGGACTATCAAAAGT 392
|..||||.|| |.||||| || ||||| ||||||| ..|.|
BL03743___ykb 350 TTGTGGCCAACTTGTTTTC--CT-GGGATAAATCCTGGACT----GCACT 392
BSNT_02174___ 393 CATTGGAATTATAGCAGTTCTCTTTTTATGCGTCATTAATATTATCGGTA 442
|||.||.||.||..|.||...||||||||||.||.|.||.||..||||.|
BL03743___ykb 393 CATCGGCATCATCACCGTCGCCTTTTTATGCATCGTCAACATCGTCGGAA 442
BSNT_02174___ 443 CAAAATACGGCGGTTTTGTCCAAACGCTGACAACGATCGGAAAACTGATT 492
|||||||||||||....||.||.|||.|.||||||||||||||.||||||
BL03743___ykb 443 CAAAATACGGCGGAGCGGTTCAGACGATCACAACGATCGGAAAGCTGATT 492
BSNT_02174___ 493 CCGATTGCCTGCATCATCATCTTTGGCCTTTGGAAAGGCGATCAGCACAT 542
||.||||..||.|||||..|.||.||.||.|||.|.||||||.|..|.||
BL03743___ykb 493 CCCATTGTATGTATCATTGTGTTCGGTCTATGGCAGGGCGATGAATATAT 542
BSNT_02174___ 543 CTTCACAGCAGTAAACGAAAGCATTTCTGATATG--------AACTTCGG 584
.||||...|.||.|..||.||||| .| ||||||||
BL03743___ykb 543 TTTCAGTTCGGTCACGGAGAGCAT--------CGCCAGCCAAAACTTCGG 584
BSNT_02174___ 585 GGCGGCTATTTTAGCTACGTTGTTTGCTTATGACGGATGGATTCTCCTTG 634
||||||..|.||.||.|||.|.||.||.||||||||.|||||.||.||||
BL03743___ykb 585 GGCGGCGGTATTGGCGACGCTATTCGCGTATGACGGCTGGATCCTTCTTG 634
BSNT_02174___ 635 CCGCTCTCGGCGGAGAAATGAAAAATCCCGAAAAGCTGCTGCC--ACGCG 682
|.||.|||||||||||||||||.|||||.|||||..||||.|| |.|||
BL03743___ykb 635 CAGCACTCGGCGGAGAAATGAAGAATCCGGAAAAAGTGCTTCCGAAAGCG 684
BSNT_02174___ 683 CTATGACGGGCGGATTATTAATTGTAACGGCGATCTATATTTTCATTAAT 732
|||||.|||||..||.|.||.||.||.||...||||.|.||||||||.
BL03743___ykb 685 --ATGACAGGCGGCATACTGATCGTCACTGCCTGCTATCTGTTCATTAAC 732
BSNT_02174___ 733 TTTGCATTGCTTCACA----TCCTG----TCAGCGAACGAAATTGTCACG 774
||.||..||||||||| ||||| |||| |||||||.|
BL03743___ykb 733 TTGGCGCTGCTTCACATTCTTCCTGCCGATCAG--------ATTGTCAAG 774
BSNT_02174___ 775 CTTGGTGAAAATGCGACAAGCACCGCGGCAACCATGCTGTTCGGGTCAAT 824
||.||.|||||||||||||||||.||.||.|||||||||||||||.|..|
BL03743___ykb 775 CTCGGCGAAAATGCGACAAGCACAGCCGCGACCATGCTGTTCGGGCCGCT 824
BSNT_02174___ 825 TGGCGGAAAGCTGAT---CAGTGTAGGGATTATCGTCAGCATCTTTGGGT 871
.|||||.|||||||| || |.||.|||||||||||||||||.||.|
BL03743___ykb 825 CGGCGGCAAGCTGATATCCA---TCGGAATTATCGTCAGCATCTTCGGCT 871
BSNT_02174___ 872 GCTTAAATGGAAAGGTGCTTTCTTTCCCGCGTGT-TTCATTTGCAATGGC 920
|||||||.||||||||.||.|||||.|||||.|| .|| |||||.|||||
BL03743___ykb 872 GCTTAAACGGAAAGGTTCTGTCTTTTCCGCGCGTGATC-TTTGCGATGGC 920
BSNT_02174___ 921 GGAACGCAAACAGCTTCCATTT-----GCTGAAAAACTGTCACATGTACA 965
.||....||||||||.|| ||| ||||.| |.||.|||||.||
BL03743___ykb 921 TGAGAAAAAACAGCTGCC-TTTCTCCCGCTGGA----TCTCGCATGTTCA 965
BSNT_02174___ 966 CCCGTCGTTCCGCACACCATGGATTGCAATTTCTT--TTCAAATTGCTT- 1012
.|||.|.||||..||.||.|||||.||| .||.| |.||.| ||.||
BL03743___ykb 966 TCCGGCATTCCATACGCCTTGGATCGCA--GTCATCGTCCAGA-TGATTA 1012
BSNT_02174___ 1013 TAGCTTTGATTATGATGCTGATCAGCAACCCTGATAAGCTCTCAGAAATC 1062
|.|||.|.|||.|.|||.|.||||||||.|||||.|||||.|||||..|.
BL03743___ykb 1013 TCGCTGTCATTTTAATGATCATCAGCAATCCTGAAAAGCTGTCAGAGGTT 1062
BSNT_02174___ 1063 TCCATTTTCATGATCTACATCTTTTATGTGATGGCCTTTTTTGCAGTGTT 1112
||.|||||.|||||.||||||||.|||||.|||||.|||||.||.||.||
BL03743___ykb 1063 TCGATTTTTATGATTTACATCTTCTATGTCATGGCGTTTTTCGCGGTATT 1112
BSNT_02174___ 1113 TATTCTCCGCAAGCGAGCAAAGGGAAAAAAGCGCGCC-----------TA 1151
||||.|.|| ||| |.||||.||.| ||| ||
BL03743___ykb 1113 TATTTTGCG-----GAG---ACGGAAGAACG---GCCAAGGAAGATCTTA 1151
BSNT_02174___ 1152 CAGTGTTCCGCTTTATCCATTTA--TGCCAATTCTGGC-AATCGCGGGCT 1198
|||.||.|||||.||||| ||| ||||..|...||| |.||.|||| |
BL03743___ykb 1152 CAGCGTGCCGCTCTATCC--TTACCTGCCTGTAGCGGCGATTCTCGGG-T 1198
BSNT_02174___ 1199 CCTTCTTTGTGCTAGGCAGCACACTCATTACAGA----TACAATGAGCTG 1244
|.||.|||||.||.|.||||||.|||||.||||| ||| |||||
BL03743___ykb 1199 CATTGTTTGTCCTTGTCAGCACGCTCATCACAGACTTCTAC----AGCTG 1244
BSNT_02174___ 1245 C----GGATTATCCATCCTCATCGGCCTTGCCGGACTGCCTGTCTATTAC 1290
| || ||.|||.|.|||||.||.|.|||.||.||.||.||||..
BL03743___ykb 1245 CCTGTGG----TCGATCTTGATCGGTCTCGTCGGTCTCCCGGTTTATTTT 1290
BSNT_02174___ 1291 GGGATGAAAAAACGAAA------------AGCAAGCTGA 1317
.|||||||||||.|||| |||...||||
BL03743___ykb 1291 TGGATGAAAAAAAGAAATAAAAACGGCTCAGCTGCCTGA 1329
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