Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02193 and BL03741
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_02193.1.5803.seq
# -bsequence dna-align/BL03741___ykgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02193-BL03741___ykgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02193-BL03741___ykgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02193
# 2: BL03741___ykgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 925
# Identity: 325/925 (35.1%)
# Similarity: 325/925 (35.1%)
# Gaps: 488/925 (52.8%)
# Score: 874.0
#
#
#=======================================
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 1 ATGGACTCAGCATTATCGAAAAAAAACCGCGGGGCGGGCTGTACAAGCGA 50
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 51 ATACGACGTCTTAAAAAAAGTGGTGTTATGCAGACCGGAGTATATGGAGA 100
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 101 TTGCAGAAGTGATCAATGAAACACAGAAGTATTTTCAAAAGGATAATATC 150
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 151 GATAAAACGCTGGCCGTCCGCCAGCATAATACATTGATAAAAGAATTGGA 200
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 201 GAGCCGGGGTATTGAAGTCGTGATTCTGCCTGCTTTAAGCCAATTTCCGG 250
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 251 AACAGGTTTTCACGCGCGATATCGGGTTTACGATCGGAGGCACTGTGTTT 300
BSNT_02193 0 -------------------------------------------------- 0
BL03741___ykg 301 TCCGCGCAGCTTTCAGCCGACATCCGCCAGGGCGAAGAAAATGTCCTGCA 350
BSNT_02193 1 ---------------------------------------------ATGCT 5
|.|||
BL03741___ykg 351 GGAATGGCTGGCAAAAGAACAAATCTCCTGGACCGCATTTAATGAAGGCT 400
BSNT_02193 6 TGATACGAGTATTGAAGGCGGAGACGTCATTATCGATGATGACATTGTCT 55
|| |.| ||.||||||||.|||.||.|..||||..|..|.|...|.|
BL03741___ykg 401 --AT-CAA--ATCGAAGGCGGCGACATCCTCGTCGACCAAAATACCATAT 445
BSNT_02193 56 ATGTCGGAATCAGCCAGCGCAC--CGTCATTTCAGCTATCGGCC------ 97
|||.|||.||||||||..|.|| ||| |.||||||
BL03741___ykg 446 ATGCCGGCATCAGCCACAGAACGACGT---------TCTCGGCCGTCCAA 486
BSNT_02193 98 -AGCTGGAAG---AGGCACTTCC------TG-AGT-ATAC--GAT-CGTT 132
|||| |||| ||| ||||| || ||| |||| |.| ||||
BL03741___ykg 487 GAGCT-GAAGCGCAGG--CTTCCCTCTTATGAAGTCATACCGGTTCCGTT 533
BSNT_02193 133 CCAGTGAAGCTGCATGAAAAATTTTTGCATTTGGACTGCGTATTTAACAT 182
|||| ||||..||..|.|||.||||.|||||.||.|||||
BL03741___ykg 534 ----TGAA-------GAAACGTTCCTTCATCTGGATTGCGTCTTCAACAT 572
BSNT_02193 183 TGTATCTGAAAGC-----GAAGCGTTAATTTATCCACAGGCCATT--GAG 225
|.|.|| || ||||||.|..|.||||||.|.||| || |||
BL03741___ykg 573 TCTTTC-----GCCGACAGAAGCGCTTGTCTATCCAAAAGCC-TTAGGAG 616
BSNT_02193 226 CCAGATGCAGCCGATATGCTGGCAAAA-CGTTATGATCTTATTGAGGTGC 274
..||| |.|..|||..| ||.|.|||| ||.|||||..|.||.||..|..
BL03741___ykg 617 AAAGA-GAATACGACGT-CTTGAAAAAGCGCTATGAGATGATCGAAATTA 664
BSNT_02193 275 CCGAGGACGAACAATTTACGCTTGGCACCAACGTCCTTTCAATCGAAAAA 324
|.||.||.|||||.||....||.||.||.|||||.||.||.||||..||.
BL03741___ykg 665 CGGATGATGAACAGTTCCAACTCGGTACAAACGTTCTGTCCATCGGCAAT 714
BSNT_02193 325 AAAACGATCATCAGTCTCCCTGGCAACCGCCATGTCAATCAACAGCTATC 374
|||||..|.|||||.||.||||..||||||||.||.|||||..||||...
BL03741___ykg 715 AAAACCGTGATCAGCCTGCCTGTTAACCGCCACGTGAATCAGGAGCTCAG 764
BSNT_02193 375 GAAAAGAGGCTATCAC-ATTATCGAAATTGACCTGTCAGAAATTATTAAA 423
.|||||.|||||| || .|.||||||||.|||.|.||.||.||.||.|||
BL03741___ykg 765 AAAAAGGGGCTAT-ACGGTCATCGAAATCGACTTATCCGAGATCATAAAA 813
BSNT_02193 424 TCAGGCGGCTCCTTCAGGTGCTGCACAATGCCG----------------C 457
||||||||.||.|||||.|||||.||..||||| |
BL03741___ykg 814 TCAGGCGGATCATTCAGATGCTGTACTCTGCCGATTGAGCGTACTTCCAC 863
BSNT_02193 458 TGATT--------CGAGGCGAATGA 474
|||.| .|.||||..|||
BL03741___ykg 864 TGAATGTTACAAAGGCGGCGCCTGA 888
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