Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03736 and BL03727

See Amino acid alignment / Visit BSNT_03736 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03736___yqgB.1.5803.seq
#    -bsequence dna-align/BL03727___yqgB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03736___yqgB-BL03727___yqgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03736___yqgB-BL03727___yqgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03736___yqgB
# 2: BL03727___yqgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 791
# Identity:     531/791 (67.1%)
# Similarity:   531/791 (67.1%)
# Gaps:          61/791 ( 7.7%)
# Score: 1610.0
# 
#
#=======================================

BSNT_03736___      1 GTGAATGTGTTTCAGC--TTTTCATTAAAAGTACATACTCTCCCCGTGAT     48
                     .|||||.|.|||||||  ||||  |||||||||||||.||.||.|..|.|
BL03727___yqg      1 ATGAATTTATTTCAGCGATTTT--TTAAAAGTACATATTCCCCTCAAGCT     48

BSNT_03736___     49 ATTGCAAAAACAAGATTTCAAGGAATCGGAAAAGCGATTCTTTATGTATT     98
                     ||||..||||...|.||.|||||.||.||||||.|||||.|.||.|||||
BL03727___yqg     49 ATTGGGAAAATGCGTTTCCAAGGCATAGGAAAAACGATTTTATACGTATT     98

BSNT_03736___     99 TTTGCTCTCTGT-----CCTGTTTGCAATCCCTACCGCTTATTATGTAAG    143
                     |||||||...||     ||     ||..||||.|.|..|||..||.|.||
BL03727___yqg     99 TTTGCTCAGCGTGATCGCC-----GCTCTCCCGAACCTTTACCATATCAG    143

BSNT_03736___    144 TACAG-GGA-CCGTAAAATCAATGAACGGCTTTAA---AACTGTTTTAAA    188
                       ||| ||| ..||.||..|.||||||.|||||.|   |.||||      
BL03727___yqg    144 --CAGCGGAGTGGTGAATACGATGAACAGCTTTCAGTCAGCTGT------    185

BSNT_03736___    189 CAAAGATTTCCCTGATTTCACAATTTCAAACGGCAAACTTCAAACGGATG    238
                     .|||||.|||||.|.||||.|.||...|.||||||.|||.|||||.||||
BL03727___yqg    186 GAAAGAATTCCCCGCTTTCTCCATAAAAGACGGCACACTGCAAACAGATG    235

BSNT_03736___    239 AGAAAAAAGCCACGGAATCTCAAGCAAATGGTTTCGTTATCGTGTTCGAT    288
                     ..||.|||||.|..|||||.||..||...||.||.||.|||||.||.|||
BL03727___yqg    236 CAAAGAAAGCGATTGAATCACAGTCATTCGGATTTGTCATCGTTTTTGAT    285

BSNT_03736___    289 CCGACAGACTCCTATGGCACTGAACAAATTGAAG-CAAA-GCAAAACGCG    336
                     ||||..|.|||.||||..||..||||.||.|||| |||| ||||..| ||
BL03727___yqg    286 CCGAGCGGCTCTTATGAAACAAAACAGATCGAAGACAAACGCAATTC-CG    334

BSNT_03736___    337 ATCGGCATCCTTCAGAACAAATTTGTTTTGGCCATTGACGGACAAGCCCA    386
                      ||||||||||..|..|.||.||.||..|.|||||||||||.||||.|||
BL03727___yqg    335 -TCGGCATCCTGAAAGATAAGTTCGTCATCGCCATTGACGGCCAAGTCCA    383

BSNT_03736___    387 AGAAATGTCTTACTCAATGATGCCATCAGAGTTACAGAAA-----AAAGA    431
                     .||||||.|.|||.|||||.|.|   |.|||     ||.|     ||.||
BL03727___yqg    384 GGAAATGCCGTACACAATGCTTC---CCGAG-----GACATGTCTAAGGA    425

BSNT_03736___    432 TG----TCATTGCAGGTTTA---AACCAAAATAAAGCGATGATTGTAACT    474
                     ||    ||.||    .||||   .|.||||||||||||.|||||||..|.
BL03727___yqg    426 TGATATTCTTT----CTTTAGTTGATCAAAATAAAGCGGTGATTGTTCCC    471

BSNT_03736___    475 GTTCTCTCAGATCTTATTTTTCTCGTAACAGCAGCGGGAAAATTTATTGA    524
                     ||..|.|..|.|||..|.||.||.|..||.|||||.||||||||.|||||
BL03727___yqg    472 GTCTTGTGCGTTCTGCTGTTCCTGGCGACGGCAGCCGGAAAATTCATTGA    521

BSNT_03736___    525 AGTATCGTTTTTAGCGCTTATCGGGTTAATCATTAAGAATTCTCAGAAAA    574
                     .||.|||.||.|.||..|.||||||.|.||||||...||....|||||.|
BL03727___yqg    522 TGTCTCGGTTCTCGCCGTCATCGGGCTGATCATTCGCAACGGGCAGAAGA    571

BSNT_03736___    575 AACAT-TTATCCTATCATCAGCTCTGG--AAGCTTTCTGCTTATTCCATC    621
                     || || .|.||||||.|.|||||.|||  ||  |.|||||||||||||||
BL03727___yqg    572 AA-ATGCTCTCCTATAAGCAGCTTTGGGTAA--TGTCTGCTTATTCCATC    618

BSNT_03736___    622 ACCCTTTCAACTGTATTCTTTACAATCATGCGGGCACTAGAAGCAACCGT    671
                     |||||..||||.||.||.|||.||||.|||...||.||.||.||....||
BL03727___yqg    619 ACCCTCGCAACCGTGTTTTTTGCAATTATGGACGCGCTGGAGGCGGTGGT    668

BSNT_03736___    672 ACCAAGTGAATTTTTGCTGAACTGGTTTGTCAATTTTGTCATCCTGTTTC    721
                     .||||||.|.||..|.||||||||||||||.||.|||.||||.|||||||
BL03727___yqg    669 TCCAAGTCAGTTCCTCCTGAACTGGTTTGTGAACTTTATCATGCTGTTTC    718

BSNT_03736___    722 TCGTTTTAAAAGAGATTCCGTCCAAAAAAGCTGCTGTATAA    762
                     |||...|.|||||.|..|||.|....|||||.||....|||
BL03727___yqg    719 TCGCCATTAAAGAAACGCCGGCTTCTAAAGCAGCGAGGTAA    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03736 and BL03727

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
