Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03751 and BL03721
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03751___ispH.1.5803.seq
# -bsequence dna-align/BL03721___ispH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03751___ispH-BL03721___ispH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03751___ispH-BL03721___ispH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03751___ispH
# 2: BL03721___ispH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 956
# Identity: 742/956 (77.6%)
# Similarity: 742/956 (77.6%)
# Gaps: 22/956 ( 2.3%)
# Score: 2836.0
#
#
#=======================================
BSNT_03751___ 1 ATGGACGTAATTAAAATTTCACCGCGCGGCTATTGCTATGGTGTTGTTGA 50
|||.|||||||||||||.||.|||||||||||||||||.|||||.||.||
BL03721___isp 1 ATGAACGTAATTAAAATATCGCCGCGCGGCTATTGCTACGGTGTCGTCGA 50
BSNT_03751___ 51 TGCTATGGTCATTGCCAAAAATGCGTCACTAGATAAAAGCTTGCCAAGAC 100
.||.||||||||.||.|||||.|||.|.||.||||||||..||||.||||
BL03721___isp 51 CGCCATGGTCATCGCAAAAAACGCGGCTCTCGATAAAAGTCTGCCGAGAC 100
BSNT_03751___ 101 CCATCTATATACTCGGGATGATTGTTCATAATAAACACGTCACTGATGCG 150
|.||.|||||..|.||.|||||.|||||.||||||||.|||||.||.||.
BL03721___isp 101 CTATTTATATTTTAGGAATGATCGTTCACAATAAACATGTCACAGACGCA 150
BSNT_03751___ 151 TTTGAAGAGGAAGGGATTTTTACATTGGACGGCTCTAACCGTCTGGACAT 200
||||||.|.||.||.||||.|||..|.||||||.|.||..|.||.||.||
BL03721___isp 151 TTTGAAAAAGAGGGCATTTATACGCTTGACGGCCCGAATAGGCTCGAGAT 200
BSNT_03751___ 201 CTTAAAGCAGGTTGACAAAGGAACTGTCATTTTCACTGCGCACGGTGTTT 250
.||.||.|||||.|||||||||||.||.||.|||||.||.|||||.||||
BL03721___isp 201 TTTGAATCAGGTCGACAAAGGAACGGTGATCTTCACCGCTCACGGCGTTT 250
BSNT_03751___ 251 CTCCCGAAGTCAGAAGAATCGCAGAAGAAAAAGGGTTAGTCGCAATTGAT 300
|.|||||||||.|.|.|||.||.||.||.|||||..|.|||||.|||||.
BL03721___isp 251 CGCCCGAAGTCCGCAAAATAGCTGAGGATAAAGGTCTTGTCGCGATTGAC 300
BSNT_03751___ 301 GCTACATGTCCGGATGTGACGAAAACTCATAATCTAATCTTAGAGATGAA 350
||.||.||.||.||||||||.|||||.||..||.|||||....|.|||||
BL03721___isp 301 GCCACCTGCCCTGATGTGACAAAAACACACGATTTAATCCGGAAAATGAA 350
BSNT_03751___ 351 AGAAAAAGGATATCACGTGATCTATATCGGCAAAAAAGGGCATCCAGAGC 400
||...||||.||||||||.|||||.|||||.||||||||.||.||.||||
BL03721___isp 351 AGCCGAAGGCTATCACGTCATCTACATCGGAAAAAAAGGACACCCGGAGC 400
BSNT_03751___ 401 CTGAGGGAGCCGTTGGCGTAGCGCCGGAGATCGTTCA-CTTAGTCGAAAC 449
||||.|||||.||.|||||.||.|||||.|||||||| ||| ||.|||||
BL03721___isp 401 CTGAAGGAGCGGTCGGCGTCGCCCCGGATATCGTTCATCTT-GTTGAAAC 449
BSNT_03751___ 450 AGAAGAAGATGT--AAAGAACCTTGATATCCAAGCAGAGAAGTTAATCGT 497
.||||||||||| |||| .||.||.||..||||.|||||..|.||.||
BL03721___isp 450 CGAAGAAGATGTGGAAAG--GCTGGACATTGAAGCGGAGAAACTGATTGT 497
BSNT_03751___ 498 GACGAATCAAACAACAATGTCTCAATGGGATGTTCACGACATTATGGAGC 547
.|||||.|||||.||.|||||.|||||||||||.|||||.||||||||..
BL03721___isp 498 CACGAACCAAACGACGATGTCCCAATGGGATGTCCACGATATTATGGAAA 547
BSNT_03751___ 548 TTGTCAAAGAAAAATATCCTCATGTCGAATATCACCAAGAGATTTGCCTC 597
..||.||||||||||||||..||||.||||..|||||.|||||||||||.
BL03721___isp 548 AGGTAAAAGAAAAATATCCGGATGTTGAATTCCACCAGGAGATTTGCCTG 597
BSNT_03751___ 598 GCTACTCAAGTGCGGCAGGAAGCTGTATCAGAGCAGGCAAAAAAAGCGGA 647
||.||.||||||||.||||||||.||.||.||.||.||.||||||||.||
BL03721___isp 598 GCCACCCAAGTGCGTCAGGAAGCGGTGTCCGAACAAGCGAAAAAAGCCGA 647
BSNT_03751___ 648 CTTAACAATCGTTGTCGGAGACCCGAAAAGCAACAATTCAAATAGGCTTG 697
.||.||.|||||||||||.||.|||||||||||.||.|||||..|.||.|
BL03721___isp 648 TTTGACGATCGTTGTCGGCGATCCGAAAAGCAATAACTCAAACCGCCTCG 697
BSNT_03751___ 698 CTCAAGTGTCAGAGGAAATAGCCGGGACAAAAGCATACCGGATCGGCGAC 747
|.||.||.||.||.|||||.||.||.||.|||||||||||||||||.||.
BL03721___isp 698 CCCAGGTCTCCGAAGAAATCGCGGGCACGAAAGCATACCGGATCGGTGAT 747
BSNT_03751___ 748 TTAAGCGAATTGAAGCTCGAATGGCTGAAAGGCGTTAATACCGTTGCAGT 797
|||||||||||.|||||.||||||||..|.|||||..|.|||||.||.||
BL03721___isp 748 TTAAGCGAATTAAAGCTGGAATGGCTTGACGGCGTAGAAACCGTCGCTGT 797
BSNT_03751___ 798 TACAGCGGGAGCTTCAACACCGACGCCGATCACAAAAGAAGTCATTCGCT 847
.||.||.||.||.||.||||||||.|||||.|||||.||||||||.||||
BL03721___isp 798 AACGGCCGGCGCATCGACACCGACCCCGATTACAAAGGAAGTCATCCGCT 847
BSNT_03751___ 848 TTTTAGAGCAGTTTGATCACGAAGATCCATCAACTTGGA----CA---AC 890
||||||||||.||.|||||.||||||||.||.||.|||| || ||
BL03721___isp 848 TTTTAGAGCAATTCGATCATGAAGATCCGTCCACATGGAAGATCAGTCAC 897
BSNT_03751___ 891 TGAACATAATATACCGCTCAAAAAAATACTT-CCAAAAGTAAAAGCAAAA 939
||| .|||||||..|.||||| ||| ||.|||||||||||||||
BL03721___isp 898 -GAA------GTACCGCTGCATAAAAT-CTTGCCTAAAGTAAAAGCAAAA 939
BSNT_03751___ 940 AACTGA 945
|.||||
BL03721___isp 940 ACCTGA 945
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