Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03721 and BL03716
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:44
# Commandline: needle
# -asequence dna-align/BSNT_03721.1.5803.seq
# -bsequence dna-align/BL03716___yqgL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03721-BL03716___yqgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03721-BL03716___yqgL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03721
# 2: BL03716___yqgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 575
# Identity: 260/575 (45.2%)
# Similarity: 260/575 (45.2%)
# Gaps: 247/575 (43.0%)
# Score: 605.5
#
#
#=======================================
BSNT_03721 0 -------------------------------------------------- 0
BL03716___yqg 1 GTGAAAAGGACAATCATCGGGAAAAAACCTTTTCAACATAGTATTCGAGG 50
BSNT_03721 1 -----------------ATGATCATTCAAAA-------CGC----TCACA 22
|.|||..||.|||| ||| |||
BL03716___yqg 51 CGATTCTTCGTTTTGTAACGATATTTTAAAAATAACTTCGCCGGATCA-- 98
BSNT_03721 23 CCCTG--ACCG------TAAGCTGGGAAATCTCAGAAGAAACAATGCGGC 64
|| |||| |.|||||||||||||||||.| .||| ||
BL03716___yqg 99 ---TGAAACCGTTCGGCTGAGCTGGGAAATCTCAGAGG-----CTGC-GC 139
BSNT_03721 65 T------GGCTGAAGCGGTCCTTTTCGAAA-------AGACGCAGGATAT 101
| ||||||||||||.||.||.|||| |||||..|
BL03716___yqg 140 TTTCAGCGGCTGAAGCGGTGCTGTTTGAAAATATTAGAGACGTCG----- 184
BSNT_03721 102 GATAAAAG--AATTGCGCATTGTCATCAAAAGAAAAGACATTGAAGCTGT 149
||||| ||| |.||.||.| |||
BL03716___yqg 185 ---AAAAGCAAAT----CCTTCTCTT--------------TTG------- 206
BSNT_03721 150 CAGTACAAAACGCACAACGTATGATAAAGGCGAATGGACGA--------- 190
.|||.||||||.|.|.||.| |||.|.||||||
BL03716___yqg 207 -CGTAAAAAACGGAGAGCGCA--------GCGCACGGACGATCCATACCG 247
BSNT_03721 191 ------TTAGACAGGCGGC--TGGT-------GATGCTGTATATCG---- 221
|||.|..||.||| .||| |.|||.|.| |.||
BL03716___yqg 248 GTGCATTTAAAGGGGAGGCCTCGGTTTTCCCCGCTGCAGGA-AACGCTTT 296
BSNT_03721 222 ------GGCTGAATACAGAATTGTGAATTCAATGA--ATGTC-------- 255
.||.||||||.|.||....|||||..|.| |||||
BL03716___yqg 297 CTACAAAGCGGAATACCGGATATACAATTCGCTCAACATGTCACTGGCCG 346
BSNT_03721 256 -TCTCTCAAGCTTGCCGGTACAGATGACATCTATCTTGATGAAAATGGGA 304
||||||| .||| ||.| |.||||.||||..|||||.||.|
BL03716___yqg 347 TTCTCTCA-----TCCG--ACTG----CTTCTACCTTGGGGAAAACGGAA 385
BSNT_03721 305 TTCGTCATATAAACAGC------TTTCAGATTGAAGAAGCGCA--CACCA 346
| .|||..||||||| ||||||..|.|||| || ||.||
BL03716___yqg 386 T---CCATTCAAACAGCAGCTGTTTTCAGCATCAAGA----CAATCAGCA 428
BSNT_03721 347 GG-TGGGAAGA-GCAATTTTCTGCATACAC--------CTGTTATGGGAG 386
|| |.|||.|| .||||||||.|||||.|| ||.|.|| ||
BL03716___yqg 429 GGATTGGACGACTCAATTTTCCGCATATACGAGATATTCTTTAAT---AG 475
BSNT_03721 387 AGGGGAAAAAGAACGG------TGA 405
|.|| |||.||.||| |||
BL03716___yqg 476 AAGG--AAAGGAGCGGCCCCGTTGA 498
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