Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03729 and BL03713
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence dna-align/BSNT_03729___pstA.1.5803.seq
# -bsequence dna-align/BL03713___pstA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03729___pstA-BL03713___pstA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03729___pstA-BL03713___pstA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03729___pstA
# 2: BL03713___pstA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity: 647/906 (71.4%)
# Similarity: 647/906 (71.4%)
# Gaps: 39/906 ( 4.3%)
# Score: 2212.5
#
#
#=======================================
BSNT_03729___ 1 ATGAACCGCAAAATAACAGATAAACTGGCGACCGGAATGTTTGGTTTGTG 50
||||||.|||||.||||||||....|.||.|||||..|.|||||.|||..
BL03713___pst 1 ATGAACAGCAAAGTAACAGATCGTTTAGCAACCGGTGTTTTTGGATTGAT 50
BSNT_03729___ 51 TGCAGCCATTATCGCTGCCATTTTAGTAGGTTTGTTTTCCTATATTATTA 100
|||.||..|.|||||.||.|||.|.||.||||||||..|.|||||.||.|
BL03713___pst 51 TGCTGCGGTAATCGCCGCTATTCTTGTCGGTTTGTTCGCTTATATCATCA 100
BSNT_03729___ 101 TAAACGGTGTTTC-----TCAG-CTCAG-TTTTCAATTT---ATTACAAC 140
|.||.|||||||| |||| ||||| ||||.||.|| .|| |
BL03713___pst 101 TCAATGGTGTTTCGCATATCAGCCTCAGCTTTTTAACTTCGCGTT----C 146
BSNT_03729___ 141 AAAATCGAGCGC---CATTGCAGCTGGAGGAGGCATACGAGATCAGCTGT 187
|| |.|||| || ||| ||.|||||.||.|||||||||||||
BL03713___pst 147 AA----GTGCGCTGTCA----AGC-GGCGGAGGAATTCGAGATCAGCTGT 187
BSNT_03729___ 188 TTAACTCCTTTTATATTTTGTTTATTACAATGCTGATTACAATCCCGCTC 237
|.|||||.|||||||||.|..|..|.||.||||||||.||..|.||.||.
BL03713___pst 188 TCAACTCGTTTTATATTCTCGTGCTGACGATGCTGATCACGGTTCCCCTG 237
BSNT_03729___ 238 GGTGTGGGCGGCGGAGTCTTCATGGCTGAATACGCGCCTAATAACAAAGT 287
||.||.|||||.|||.|.|..|||||.|||||.|||||....||||||.|
BL03713___pst 238 GGAGTCGGCGGGGGAATTTATATGGCGGAATATGCGCCCGCAAACAAATT 287
BSNT_03729___ 288 AACTGACTTCATCAGAACATGTATAGAGGTGCTTTCATCTCTTCCGTCTA 337
.||.||.||.|||.|....|||||.||.||..|.|||||.|||||.||.|
BL03713___pst 288 GACCGATTTTATCCGTGTCTGTATTGAAGTTTTGTCATCCCTTCCTTCGA 337
BSNT_03729___ 338 TTGTCATTGGGATGTTTGGATTATTGATGTTTGTCAACTTAACAGGCTGG 387
|.||.||.||||||||.||..|..||||||||||.||..|.||.||.|||
BL03713___pst 338 TCGTTATGGGGATGTTCGGCATGCTGATGTTTGTAAATCTGACCGGATGG 387
BSNT_03729___ 388 GGATATACGATCATAGGCGGGGCGCTTGCGTTAACTGTTTTTAACCTTCC 437
||.||.|..||.||.||.||.||||||||.||.||..||||.|||||.||
BL03713___pst 388 GGGTACAGCATTATCGGAGGAGCGCTTGCTTTGACGATTTTCAACCTGCC 437
BSNT_03729___ 438 TGTCATGGTGCGTGTGACAGAAGACGCGATCCGTTCAGTCCCTAAAGATC 487
|||||||||..|.|||||||||||.||||||||.||.||.|||||.||.|
BL03713___pst 438 TGTCATGGTCAGGGTGACAGAAGATGCGATCCGCTCCGTACCTAAGGAGC 487
BSNT_03729___ 488 TGAAGGAAGCCTCTCTCGCTTTAGGTGTATCACGCTGGCATACCGTAAAA 537
..||.||.||.||.||.||||||||.||.||....|||||.||..|.|||
BL03713___pst 488 AAAAAGAGGCTTCCCTTGCTTTAGGCGTGTCCAAATGGCACACGATTAAA 537
BSNT_03729___ 538 ACGGTTTTAATTCCAAGTGCGATTCCTTCTATTATCACAGGAGCAATTTT 587
|||||.||.|||||..|.|||.|.||.||.||.||||||||.||.|||.|
BL03713___pst 538 ACGGTATTGATTCCTGGCGCGGTGCCGTCCATCATCACAGGCGCGATTCT 587
BSNT_03729___ 588 AGCGTCAGGAAGGGTGTTCGGGGAAGCGGCCGCATTATTATTTACGGCAG 637
.|||||.||..|.||.||.||.|||||.|||||.||..|.|||||.||.|
BL03713___pst 588 TGCGTCGGGCCGTGTATTTGGCGAAGCTGCCGCTTTGCTGTTTACAGCCG 637
BSNT_03729___ 638 GCCTGACAACACCGCGTCTTAATTTTACGGAGTGGAACCCGTTTTCGGAA 687
|.||.||.||.|||.|.||.||||||.|.||.|||||.||||||||.||.
BL03713___pst 638 GACTAACCACGCCGAGACTGAATTTTGCCGATTGGAATCCGTTTTCTGAG 687
BSNT_03729___ 688 ACATCACCGCTTAATATTTTCAGGCCCGCTGAAACACTTGCGGTCCACAT 737
|||||.|||||.|||||||||||.||.||||||||.||.||.||.||.||
BL03713___pst 688 ACATCGCCGCTCAATATTTTCAGACCGGCTGAAACGCTGGCCGTTCATAT 737
BSNT_03729___ 738 TTGGAACGTCAATACACAAGGAATGATTCCGGATGCTGAAGCGATTGCCA 787
||||||.||.||.|||||.||.||.||.||.||||||||||||||.||.|
BL03713___pst 738 TTGGAATGTAAACACACAGGGGATCATCCCCGATGCTGAAGCGATCGCAA 787
BSNT_03729___ 788 ACGGTGGTTCTGCCGTGCTGGTGATTTCTGT---TCTTG-TGTTTAATCT 833
||||.|..||.|||||.||.| |||||| ||||| |.|||||.||
BL03713___pst 788 ACGGCGCATCCGCCGTTCTCG----TTCTGTCCGTCTTGATCTTTAACCT 833
BSNT_03729___ 834 CGCAGCGAGATGGCTTGGCACGATGATCTACAAGAAGCTTACGG----CA 879
.|||||..|||||||.|||.|..|.||..|.||.|||.|.|||| ||
BL03713___pst 834 GGCAGCCCGATGGCTCGGCTCTTTTATTCATAAAAAGTTAACGGCAAACA 883
BSNT_03729___ 880 AATTAG 885
|||.|
BL03713___pst 884 AATAA- 888
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