Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03740 and BL03704
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:46
# Commandline: needle
# -asequence dna-align/BSNT_03740___yqfX.1.5803.seq
# -bsequence dna-align/BL03704.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03740___yqfX-BL03704.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03740___yqfX-BL03704.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03740___yqfX
# 2: BL03704
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 497
# Identity: 265/497 (53.3%)
# Similarity: 265/497 (53.3%)
# Gaps: 145/497 (29.2%)
# Score: 770.5
#
#
#=======================================
BSNT_03740___ 1 TTGACATTAACAGAAAAGTTTAGCAAACATGAATCAGGCAAAATGGATCA 50
BL03704 0 -------------------------------------------------- 0
BSNT_03740___ 51 AACTATAAAAGCTCCTTTAATAAAACAGAAGGGGGAATTGAAGGTGGCAA 100
.|||.||
BL03704 1 -------------------------------------------ATGGAAA 7
BSNT_03740___ 101 ACGATTACGAAAAG--CGTGA---TAAC--AACA-GTTACTATGTTGATC 142
..||| |.|||.| ||.|| |||| |.|| ||||..|||.||| |
BL03704 8 GAGAT--CAAAATGTTCGCGATCGTAACCGAGCAGGTTATGATGCTGA-C 54
BSNT_03740___ 143 ATGGATCTGAAGGGACAAATATTACCCGCGACAATGACGGTTTTTTTGAG 192
.|.| || ||.|.||| .||| ||.|||||.|..|||||.||.
BL03704 55 TTAG-TC-GATGCGAC----TTTA-----GATAATGATGAATTTTTAGAA 93
BSNT_03740___ 193 GAAACAGCTGCTGAAATCGCAGAGCCTTATCGTGCTGCTGACCGCAGCAA 242
||||||||.||.|||.|.||...|.|.||||||.|.|.|.||.|...|||
BL03704 94 GAAACAGCAGCAGAAGTTGCCCCGACCTATCGTACGGATAACGGGGACAA 143
BSNT_03740___ 243 TGACCAAG------ACAAT---GATCGCAGCGACGGCAATGTCAATGAAG 283
.|.|.||| ||.|| ||| ||.|| |||| |
BL03704 144 CGGCGAAGCGCGTAACGATGCCGAT-GCTGC--CGGC------------G 178
BSNT_03740___ 284 GACGGGGAATAGGATATAT--CGCTTTAGC-CTTGTCCATCATTTCATTG 330
||||.|.||..|||||||| ||||| || ||| ||.||.|||||.|||
BL03704 179 GACGTGTAACCGGATATATTGCGCTT--GCGCTT-TCGATTATTTCCTTG 225
BSNT_03740___ 331 TTTGTACTGCCTGTTTTATTGGGAGCTGCCGGTATTATTGTCGGCTATAT 380
|||.|.||.||.||..|.||.|||..|||.||.||.||||||||.|||||
BL03704 226 TTTATGCTTCCAGTGCTGTTAGGAATTGCAGGGATCATTGTCGGTTATAT 275
BSNT_03740___ 381 CGCAAGAAGAAGAGGTGCTCAAGGCCTTGGAGCCTGGGCAATGGGTATCG 430
.||.||||||..|||.||....|||.|.|||||.||||||||||||||||
BL03704 276 AGCCAGAAGACAAGGAGCAGCTGGCTTAGGAGCATGGGCAATGGGTATCG 325
BSNT_03740___ 431 GTGTCGTTTCATTAGTGCTTGGAATATTTATTATTCCATTTTTCTAA 477
|||..|||||.||.||||||||.|||||.||.|..||.|||||||||
BL03704 326 GTGCAGTTTCCTTGGTGCTTGGCATATTCATCACCCCGTTTTTCTAA 372
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