Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05521 and BL03686
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05521.1.5803.seq
# -bsequence dna-align/BL03686___ywqJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05521-BL03686___ywqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05521-BL03686___ywqJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05521
# 2: BL03686___ywqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2058
# Identity: 1098/2058 (53.4%)
# Similarity: 1098/2058 (53.4%)
# Gaps: 624/2058 (30.3%)
# Score: 3568.0
#
#
#=======================================
BSNT_05521 1 ATGAGCAAAGTATTTGAATCTAAATCTTTAATCGAAGAAGCGAAGAGCAG 50
||| ||||||||||||.|..|.||||||||.||||.||||||.|.|.|
BL03686___ywq 1 ATG---AAAGTATTTGAAGCGCATTCTTTAATTGAAGCAGCGAATAACCG 47
BSNT_05521 51 AAAAAAGCAATATGAGACGCTTGAGGAGCAGCTGAATACGCTGAAAAAAG 100
.||.||.|||||.||.||..|||||||.||.|||.|.|||||.|||||||
BL03686___ywq 48 CAAGAAACAATACGAAACCTTTGAGGATCAACTGCAAACGCTCAAAAAAG 97
BSNT_05521 101 CGTTTCAGGGAGTTGCAGATTTAGGCGATAATTTTAAAGGAAAAGGCGCG 150
||||||..|||||.||.||||||||.|||.|||||.|.||.|||||.|||
BL03686___ywq 98 CGTTTCTCGGAGTCGCCGATTTAGGTGATGATTTTCAGGGGAAAGGTGCG 147
BSNT_05521 151 GACAATATTAAAGATTTTTTTCAGGGACAGGCGGAAATCGTAGACAGCTG 200
||.||.||||||||.||.|...||||||||||.||.|||||.||||||||
BL03686___ywq 148 GATAACATTAAAGACTTCTACAAGGGACAGGCCGAGATCGTTGACAGCTG 197
BSNT_05521 201 GCTGACGCTTGTCTCTGCTCAAATTGCGTTTTTAAATGGCATTTCAGGAG 250
|.|.|.||||||....||.||.|||||.|||||.|||||..|.|||||.|
BL03686___ywq 198 GTTAAAGCTTGTTGAAGCGCAGATTGCTTTTTTTAATGGTGTATCAGGTG 247
BSNT_05521 251 ATATTAAAGATCAAGAA-CTGAATGATTCATATGTGGAAACTTCTTTTTT 299
|.||.||||| |||.|| |||...|||||.|||||||||...||||||||
BL03686___ywq 248 ACATAAAAGA-CAAAAAGCTGTCCGATTCTTATGTGGAAGTCTCTTTTTT 296
BSNT_05521 300 GGATCATGAGCTGCCCAATGGAGACCTGAAAGCCTCAGAGATTGTCTCCG 349
|||||||||.|||...||.|..||..|||||||..|.||.||.|||||.|
BL03686___ywq 297 GGATCATGAACTGAAAAACGCTGATTTGAAAGCGACGGAAATCGTCTCGG 346
BSNT_05521 350 CCCATAAAG-AAGAAATCGATTCTATTTTGTCAGGCATCAGCGATATTAT 398
..| |.||| ..|||||.|||...||..|..||.|||||||||||||..|
BL03686___ywq 347 GGC-TCAAGCTGGAAATGGATAAAATCATCGCAAGCATCAGCGATATCGT 395
BSNT_05521 399 TGACCTCGACATGTATACGCTTGACGACTATGCAGATAAGATGGGCGATG 448
|||..|.||||..|..|||||||||||.|||...|||||.|||....|.|
BL03686___ywq 396 TGATTTGGACAATTGGACGCTTGACGATTATATTGATAAAATGTCTAAAG 445
BSNT_05521 449 CCCAAA-AAATCAGACGTGACACGATC-ACAGCTGTCGATAAGCTTGATG 496
|.|||| ||.|| |.|...||||.||| || |||||..||||.||.||||
BL03686___ywq 446 CGCAAACAACTC-GGCAAAACACCATCGAC-GCTGTGAATAAACTGGATG 493
BSNT_05521 497 AATCCCTGACAACTGAATATCA-AAATTTAGAATCTCTGGACAACGCAGT 545
||||.||.|..||.||||| || |||.|||.||.|.||.||||.|||.||
BL03686___ywq 494 AATCGCTCAAGACCGAATA-CACAAACTTACAAGCGCTCGACAGCGCCGT 542
BSNT_05521 546 GCTCACCAAATATTCCGTTCTCATGCAGGCCACCAGCAATGGGAAGAGCG 595
||||..|||||||||||..||.|||.|.||.||.||..||||.||.|.||
BL03686___ywq 543 GCTCGGCAAATATTCCGGGCTGATGGAAGCTACAAGTCATGGAAAAACCG 592
BSNT_05521 596 CTTCTCCTATGTACTATGACAAAAAAGCCTTCCAC---AGCAATGAAGTC 642
|.||.||.|||||.|.|..|...|||.|.|||||| ||| ||..||
BL03686___ywq 593 CCTCACCGATGTATTTTAGCTTGAAATCGTTCCACTCAAGC---GAGATC 639
BSNT_05521 643 TACAAAA--GCGTCATTGAAGTAGAAAATCAAGGAACAACCTATATCG-A 689
||.|||| .|| ||.|||||.||||||||||...|.|..|||||.| |
BL03686___ywq 640 TATAAAAATACG--ATAGAAGTCGAAAATCAAGCCGCCAATTATATTGAA 687
BSNT_05521 690 TGCAAAAACCCAGCAAGCAGAAGCAAGACGGCTCCAGGAAAAAGCCGAGG 739
|.|||||| ..|.||.||||||||..|..||||.||.||||||...||.|
BL03686___ywq 688 TTCAAAAA-TGAACAGGCAGAAGCGCGCAGGCTTCAAGAAAAACAAGAAG 736
BSNT_05521 740 AAGAAGCAAACAAACCGTGGTACGAAAAAACATGGGATGGAGTTTGC--- 786
|||||||.|||||.||.|||.|...|||| |.|.|.||...|||
BL03686___ywq 737 AAGAAGCGAACAAGCCTTGGGATTTAAAA----GCGCTTGACGCTGCCGG 782
BSNT_05521 787 AAC-TTTACTGGAGAAGTCACTGGCTATTATGATTATAAAAGAGCAACCG 835
||| |||...||||||||||..||.||||||||||||||.|||||..|.|
BL03686___ywq 783 AACATTTGTCGGAGAAGTCAGCGGGTATTATGATTATAAGAGAGCCGCTG 832
BSNT_05521 836 AAGGCGTTGATCCGGTTACCGGAGAAAAACTCTC-CACCGCAGAGCGTGT 884
|||||||.||.|||||.||.||||||||.||..| .||.|| .|||||||
BL03686___ywq 833 AAGGCGTCGACCCGGTCACAGGAGAAAAGCTGACAGACGGC-CAGCGTGT 881
BSNT_05521 885 GACAGCAGGAGCTATGGCCGCTGCCGGATTCATACCAGTCGTCGGCTGGG 934
..|.||.|||||.|||||.||.||.|||||.||.||..||||.||.||||
BL03686___ywq 882 CGCCGCCGGAGCAATGGCGGCAGCAGGATTTATTCCGATCGTAGGGTGGG 931
BSNT_05521 935 CAGGCCGGGCCTTCAAAGGCGGAAAAGCCATCTACAAAACCGGAAAAGCA 984
|||||||.|||||||||||||||||||||||.||.|||||.|||||||.|
BL03686___ywq 932 CAGGCCGAGCCTTCAAAGGCGGAAAAGCCATTTATAAAACAGGAAAAGGA 981
BSNT_05521 985 GCT-ATCGCGGCTGAACACGCTTTAGACGCCTACAAAACAGGC----AAA 1029
|| |||||.|||||.|||||..|.|||||||||||| || |||
BL03686___ywq 982 -CTCATCGCCGCTGATCACGCGCTTGACGCCTACAAA----GCCTCAAAA 1026
BSNT_05521 1030 TCCTTAGACATTCTCAAAATGACAGAAATGGGTGCATACGGCCTTGTAGC 1079
.|.||..||.|..|.||||||||.||||||||.||.|||||||||||.||
BL03686___ywq 1027 ACGTTGAACGTCTTGAAAATGACGGAAATGGGCGCCTACGGCCTTGTCGC 1076
BSNT_05521 1080 GTCAAACGGATTCTCAGAAGCCGTCACAGGCCGGGATATGTTCGGAAACA 1129
.|||||.||.|||||||||||||||||.|||..|||.|||||.|||||||
BL03686___ywq 1077 TTCAAATGGGTTCTCAGAAGCCGTCACGGGCAAGGACATGTTTGGAAACA 1126
BSNT_05521 1130 AAGTGTCTGAGGAGAAGCGGAAA-ACGGGTGCGCTG---GAAGCGGCATT 1175
||||.|||||.||||.||||||| |.|| .||| |||||..|.||
BL03686___ywq 1127 AAGTTTCTGAAGAGAGGCGGAAACAAGG----CCTGATCGAAGCCACCTT 1172
BSNT_05521 1176 GAGCTTGGTTGGAGCCGGTGCATTGGCG----------AAAC-------- 1207
||||.|.||.||.||.||||| ||.|| ||||
BL03686___ywq 1173 GAGCCTCGTCGGTGCAGGTGC--TGTCGCAAAAACGGCAAACCACGGCGC 1220
BSNT_05521 1208 ----ATATTG---ATAAAGG----------CATCCCGCTTGCAACCCATT 1240
|.|||| |.||.|| |||.|||||.| ||.|.|
BL03686___ywq 1221 TCAAACATTGGCCAAAACGGCCGGCAAAAACATTCCGCTCG---CCAAAT 1267
BSNT_05521 1241 ---CAAAA---------TTCCAAAAAGCAAACAAAACACTAGAAAAAGTA 1278
||||| .|.|||||||.||||||.|..||.|||||.||.
BL03686___ywq 1268 CGCCAAAAGCAGCTCTGGTGCAAAAAGGAAACAACATCCTTGAAAAGGTG 1317
BSNT_05521 1279 AAACAATTCAAAGTCCCAACAAACGTCCGCGTATACGCAGAAC-GCCCAG 1327
|||...|||.|||||||.||||||||||||||.||||..|||| |||
BL03686___ywq 1318 AAATCCTTCCAAGTCCCGACAAACGTCCGCGTCTACGTCGAACAGCC--- 1364
BSNT_05521 1328 TAACTCCGGAGGGCTTTACA---------TTCGGAATCCCGACAGTACGT 1368
|..|||||.| ||| .||||.|.|||.|..||.||.
BL03686___ywq 1365 TGCCTCCGCA-------ACAGGCCACCGCATCGGCACCCCAATTGTCCGC 1407
BSNT_05521 1369 GTAGATGTGGAAAAGACGGCTGTTAAGGATCTTGGGATTGTGAAGATGGT 1418
||..||||.|||||.|||.|.||.||.||.|||||.||||||||||||||
BL03686___ywq 1408 GTGAATGTTGAAAAAACGCCGGTGAAAGAGCTTGGAATTGTGAAGATGGT 1457
BSNT_05521 1419 -AGTGATGGCG-----GTC-GTAAGGGA---AGCTCTCATAGTCCTAACA 1458
||||.|||.| ||| |||||||| ||..||..||| |||.|
BL03686___ywq 1458 GAGTGGTGGGGGGAACGTCAGTAAGGGAGCCAGGACTGGTAG---TAAAA 1504
BSNT_05521 1459 T--------------------------TTCT-----AAAAATCACGA--- 1474
| |||| |||||| .||
BL03686___ywq 1505 TAGATGTTGGAAAAGCTGATTTAGGTGTTCTGCGCCAAAAAT--GGAATG 1552
BSNT_05521 1475 ----TAAA---------GTAG----------------------------- 1482
|||| ||.|
BL03686___ywq 1553 TTCCTAAAACTGACACTGTTGCGGTTGGAAAGACAGATGTGGAAGGTTTG 1602
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1603 GAAAATTTAGTATTTGAGGGTGGATCCCCTAAAGTTAGAAAAGAAGCCGG 1652
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1653 GCTTCCCGATTTAGACTCAGTAATGCCAGATAGACCTATAAAATCTCCAG 1702
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1703 GAAAAATCGCAAGTGCAACAAGACATGCTGAAGAAGGCGTGTTAAATGAT 1752
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1753 TTTATAAGCAAAGTAGAAGCTTTAGGAAAAAATCCTGCTGAAATAACAGG 1802
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1803 AACATTAAAAATTCACCAATCTAATCCTAAAGGGGTTTGTCCAACCTGTA 1852
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1853 TTCAAGGACTAAATAATCCGAATGTACCAGCTGGAGTATTTAAGCAATTT 1902
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1903 AGCGAGATGTTTCCTAATTTGACGATAGAAGTAACTTCTGAGACTATTCA 1952
BSNT_05521 1482 -------------------------------------------------- 1482
BL03686___ywq 1953 AGGAATCAAGCCAAACGGAAGATTGAATTTAGTTATTAAAAATGGTGAAT 2002
BSNT_05521 1482 -------- 1482
BL03686___ywq 2003 ATATTTAA 2010
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