Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02747 and BL03658

See Amino acid alignment / Visit BSNT_02747 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:30
# Commandline: needle
#    -asequence dna-align/BSNT_02747___tdh.1.5803.seq
#    -bsequence dna-align/BL03658___tdh.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02747___tdh-BL03658___tdh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02747___tdh-BL03658___tdh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02747___tdh
# 2: BL03658___tdh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity:     744/1101 (67.6%)
# Similarity:   744/1101 (67.6%)
# Gaps:         117/1101 (10.6%)
# Score: 2392.0
# 
#
#=======================================

BSNT_02747___      1 ATGCAGAGT-----GGAAAGATGAAAGCTCTAATGAAAAA------GGA-     38
                             |     |||||.||||||||.||.||.||.||      ||| 
BL03658___tdh      1 --------TTGGACGGAAATATGAAAGCGCTTATCAAGAAGCCGGGGGAG     42

BSNT_02747___     39 CGGGGCG-----TTCGGTGCTGTGCTGACTGAAGTTCCCATTCCTGAGAT     83
                     |.|||||     |||      |.|||      .||.||.|||||..||||
BL03658___tdh     43 CCGGGCGCCAGCTTC------GAGCT------CGTCCCGATTCCGAAGAT     80

BSNT_02747___     84 TGATAAACATGAAGTCCTCATAAAAGTGAAAGCCGCTTCCATATGCGGCA    133
                     .||.|||||.||.|||||.||.|||||.||||||||.||.||.|||||.|
BL03658___tdh     81 CGACAAACACGAGGTCCTGATCAAAGTCAAAGCCGCATCGATTTGCGGAA    130

BSNT_02747___    134 CGGATGTCCACATTTATAATTGGGATCAATGGGCACGTCAGAGAA-----    178
                     |.||||||||.|||||||||||||||.|||||||      ||.||     
BL03658___tdh    131 CCGATGTCCATATTTATAATTGGGATGAATGGGC------GAAAAGCAGG    174

BSNT_02747___    179 -TCAAAACACCCTATGTTTTCGGCCATGAGTTCAGCGGCATCGTAGAGGA    227
                      |.|||.|.||.|||||.||||||||.||.||...||||...||.|...|
BL03658___tdh    175 GTTAAACCGCCTTATGTGTTCGGCCACGAATTTTCCGGCGAAGTTGTTCA    224

BSNT_02747___    228 CGTGGGAGAGAATGTCATTAGTGTAAAAGTGGGAGAGTATGTGTCTGCGG    277
                     .|||||.||.|||||.|.||..|||||||..||.||||||||.||.||.|
BL03658___tdh    225 AGTGGGGGAAAATGTGACTACGGTAAAAGAAGGGGAGTATGTTTCGGCAG    274

BSNT_02747___    278 AAACACACATTGTCTGTGGTGAATGTG--TCCCTTGCCTAACAGGAAAAT    325
                     ||||.|||||.||.||.|  |||.|||  |.||.||..|.||.||||||.
BL03658___tdh    275 AAACGCACATCGTTTGCG--GAAAGTGCCTGCCGTGTTTGACCGGAAAAG    322

BSNT_02747___    326 CTCATGTGTGTACCAATACTGCT-ATAATCGGAGTGGACACGGCAGGCTG    374
                     ..|||||.||.|..||.|| ||| ||..||||.||.||.||.|..|||||
BL03658___tdh    323 AGCATGTCTGCAAAAAAAC-GCTGATTCTCGGTGTCGATACAGACGGCTG    371

BSNT_02747___    375 TTTTGCGGAGTATGTAAAAGTTCCAGCTGATAATATTTGGAGAAATCCCG    424
                     ||||||.||.|||||.|||.|.||.||.|..||.|||||||.|||.||.|
BL03658___tdh    372 TTTTGCTGAATATGTCAAAATGCCCGCCGCAAACATTTGGAAAAACCCGG    421

BSNT_02747___    425 CTGATATGGACCCGTCGA--TTGCTTCCATTCAAGAGCCTTTAGGAAATG    472
                     |.|..|||  ||.|..||  |.|||||.||||||||.||..|.|||||||
BL03658___tdh    422 CCGGCATG--CCTGAGGATCTCGCTTCTATTCAAGAACCGCTCGGAAATG    469

BSNT_02747___    473 CAGTTCATACCGTACT--CGAGAGCCA-GCCTGCAGGAG-GAACGACTGC    518
                     |.||.|||||.||.||  ||.||   | |.|.||.|||| |||.|.| ||
BL03658___tdh    470 CCGTGCATACGGTTCTGACGGGA---ATGACGGCTGGAGTGAAAGTC-GC    515

BSNT_02747___    519 AGTGATTGGATGCGGACCGATTGGTCTTATGGCTGTTGCGGTTGCAAAAG    568
                     .||..|.||.|||||||||||.||.||.|||||.||.||.||||||||||
BL03658___tdh    516 TGTCGTCGGCTGCGGACCGATCGGACTGATGGCCGTGGCAGTTGCAAAAG    565

BSNT_02747___    569 CAGCAGGAGCTTCTCAGGTGATAGCGATTGATAAGAATGAATACAGGCT-    617
                     |..|.||.||..|.||||||||.||.||.|||||.|||||||||||||| 
BL03658___tdh    566 CGTCTGGGGCGGCGCAGGTGATCGCCATCGATAAAAATGAATACAGGCTC    615

BSNT_02747___    618 GAGGCTTGCAAAACAAATGGGAGCGACTTGTACTGTTTCTATTGAAAAAG    667
                     || .||||||...||||||||.||.||...||...|.||..|||||||||
BL03658___tdh    616 GA-CCTTGCATTGCAAATGGGGGCAACCGATATCATCTCCGTTGAAAAAG    664

BSNT_02747___    668 AAAACCCGCTCAAAATTGTAAGCGCTTTAACGAGTGGGGAAGGAGCAGAT    717
                     ||.|.||||||||||.|||||||||||||||.|.|||.|||||.||.|| 
BL03658___tdh    665 AAGATCCGCTCAAAAATGTAAGCGCTTTAACAAATGGTGAAGGGGCGGA-    713

BSNT_02747___    718 CTT-GTTTGTGAGATGTCGGGTCATCCCTCAGCGATTGCCCAAGGTCTTG    766
                     ||| |||||.||.|||||.||.|||||..|.||.||...||||.||.|..
BL03658___tdh    714 CTTGGTTTGCGAAATGTCAGGCCATCCGACGGCAATCCGCCAAAGTTTAA    763

BSNT_02747___    767 CGATGGCTGCGAATGGCGGAAGATTTCATATTCTCAGCTTGCCGGAACAT    816
                     ..|||||.||.||.||.|||.|..|||||.|..|.||||||||.||.|||
BL03658___tdh    764 AAATGGCGGCAAACGGAGGACGGGTTCATGTCTTAAGCTTGCCTGAGCAT    813

BSNT_02747___    817 CCGGT-------GACAATTGATTTGACGAATAAAGTGGTATTTAAAGGGC    859
                     ||.||       ||||       ||||.|||.|..|.||.||||||||..
BL03658___tdh    814 CCCGTATGCATCGACA-------TGACAAATGATATCGTCTTTAAAGGAT    856

BSNT_02747___    860 TTACCATCCAAGGAATCACAGGAAGAAAAATGTTTTCAACATGGCGCCAG    909
                     |.||..||||||||||.||.||..|.|||||||||..|||.|||.|.|||
BL03658___tdh    857 TGACGGTCCAAGGAATTACCGGCCGCAAAATGTTTGAAACGTGGAGACAG    906

BSNT_02747___    910 GT-----GTCT----CAGTTGATCAG------TTCAAACGTGATCGATCT    944
                     ||     ||||    ||    |||.|      |||||     |||.|   
BL03658___tdh    907 GTCAGCGGTCTCCTCCA----ATCCGGCACGATTCAA-----ATCAA---    944

BSNT_02747___    945 TGCACCTGTTATTACCCATCAGTTT-CCGTTAGAGGAGTTTGAAAAAGGT    993
                        .|||||.||.||.|| |.|||| |||.|.||.||||||||||||||.
BL03658___tdh    945 ---GCCTGTCATCACTCA-CCGTTTCCCGATGGAAGAGTTTGAAAAAGGC    990

BSNT_02747___    994 TTCGAACTGATGAGAAGCGGGCAGTGCGGAAAAGTAATTTTAATTCCATA   1043
                     ||.|||||||||||||..|||||.|||||.|||||..|..|.||.||.||
BL03658___tdh    991 TTTGAACTGATGAGAAAAGGGCAATGCGGCAAAGTCGTACTGATACCGTA   1040

BSNT_02747___   1044 A   1044
                     .
BL03658___tdh   1041 G   1041


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.