Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02353 and BL03653
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02353___ykuE.1.5803.seq
# -bsequence dna-align/BL03653___ykuE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02353___ykuE-BL03653___ykuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02353___ykuE-BL03653___ykuE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02353___ykuE
# 2: BL03653___ykuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 928
# Identity: 594/928 (64.0%)
# Similarity: 594/928 (64.0%)
# Gaps: 137/928 (14.8%)
# Score: 1828.5
#
#
#=======================================
BSNT_02353___ 1 ATGAAAAAGATGTCCAGAAGACAATTTCTAAAAGGAATGTTCGGCGCTCT 50
||||||||...||||||||||||||||.|||||||..|.||.||| ||
BL03653___yku 1 ATGAAAAATCCGTCCAGAAGACAATTTTTAAAAGGCTTCTTAGGC---CT 47
BSNT_02353___ 51 TGCTGC--CGGGGCT-TTAACGGCCGGCGGGGGATATGGCTATGCCAGGT 97
|||.|| |.||||| ||.||.||.|.|||.||.|..||||||||..|.|
BL03653___yku 48 TGCCGCAGCAGGGCTCTTTACCGCTGCCGGCGGCTTGGGCTATGCGCGCT 97
BSNT_02353___ 98 ATCTCGAGCCGCATATGATCGAGACAACCGAACACACAATAAAAAGCTCT 147
|||||||.|||||.|||.|.|| ||||.||..|| .|
BL03653___yku 98 ATCTCGAACCGCACATGCTTGA--------AACAAACTTTA-------TT 132
BSNT_02353___ 148 CTCATCCCGCA-CGG---ATT--TGACGGTTTTAA---------AATCGT 182
|.|||.|.||| ||| ||| |.|.||.|||.| .|||||
BL03653___yku 133 CCCATTCGGCATCGGCTCATTCCTAAAGGGTTTGATCAGTTTCGGATCGT 182
BSNT_02353___ 183 GCAGTTCAGCGATGCACACTTGAGTGATTACTTTACTCTCGAAGA---TT 229
.||||||||||||.|.|||||.||.||.||||||||....||.|| ||
BL03653___yku 183 TCAGTTCAGCGATACCCACTTAAGCGAATACTTTACAGCAGACGAGCTTT 232
BSNT_02353___ 230 TAAAAACTGTCATTCTTACAATTAA-TGAA-----TCTAAACCTGATCTC 273
.|||...|||||..| || |||| ||| ..||.|||||.
BL03653___yku 233 CAAATGTTGTCAGCC--------AAGTGAACGCCCTCT-CCCCGGATCTT 273
BSNT_02353___ 274 ATTGTTTTTACAGGTGATATTATCGATAATCCTGATACG-TACCAGCACC 322
||.||.||.|..||.|||.|.||.|||||.||..|| || ||||.|.|.|
BL03653___yku 274 ATCGTATTCAGCGGGGATTTAATAGATAAACCGCAT-CGCTACCGGGAAC 322
BSNT_02353___ 323 ACCAG---GCAGTCATTCCATTATTGAGAAAGCTTAATGCTCCCTTCGGC 369
||.|| ||.||.|...|.||| |.|||||||...||.||||..||.
BL03653___yku 323 ACGAGCGTGCTGTAAGCGCCTTA---AAAAAGCTTTCAGCCCCCTATGGA 369
BSNT_02353___ 370 AAGCTTTGTATTTACGGCAATCATGATCACGGAGGCTATGGAACTGCCGT 419
||||||..|||.|.|||.||.|||||||||||||||||||||
BL03653___yku 370 AAGCTTGCTATATTCGGGAACCATGATCACGGAGGCTATGGA-------- 411
BSNT_02353___ 420 TTACAAAAGCCTGATGA--------------CGGCCGGAGGTTTCACGGT 455
|||||||.|| ||.| ||||| |||||...|||
BL03653___yku 412 --ACAAAAGTCT-ATCAGACGCTCATGGCATCGGCC---GGTTTTCGGGT 455
BSNT_02353___ 456 ATATCGCAATGGCTATCAAAC-----------------ATTG-TCACTCG 487
|||...|||| |||| |
BL03653___yku 456 -----------GCTGCGAAACGATTTGCTGAAGCTTGAATTGAT------ 488
BSNT_02353___ 488 CAGATGGCAGCAAAATCGAGATTGCTTCGCTTGATGACTTAATGCTGGGA 537
|||.||.|||..|||.|||||.|||||.||.|||||.||.|||||.||.
BL03653___yku 489 -AGACGGAAGCGTAATTGAGATCGCTTCACTCGATGATTTGATGCTCGGC 537
BSNT_02353___ 538 AACCCAGATTATGAAGGCACCCTTTCAAGGCTGAGCGACAGACTTTTTTC 587
|..||.||.||.|||||||.|||.||||.|||||||.|.|.|...|||||
BL03653___yku 538 AGACCTGACTACGAAGGCATCCTGTCAAAGCTGAGCAAAAAAGCCTTTTC 587
BSNT_02353___ 588 CATTCTTCTCGTCCATGAACCTGATGCGGCCTTGAAAACAACAGAT---T 634
.|||.|.|||||||||||.||||||||.||.|| |||..||.|| |
BL03653___yku 588 GATTTTGCTCGTCCATGAGCCTGATGCCGCTTT---AACGGCAAATCAAT 634
BSNT_02353___ 635 ATCCCGTGAACCTTCAGCTTTCCGGCCATACACACGGCGGCCAGATTCAG 684
|.|||||.||.||.||..|.|||||.||.||.||||||||.||.||||||
BL03653___yku 635 ACCCCGTCAATCTGCAAATATCCGGACACACCCACGGCGGACAAATTCAG 684
BSNT_02353___ 685 CTGCCTTTTTACGGACCGATTATTACGCCTCCATATGGAAAAGTCTACAC 734
.|.||..|.|.|||.||..|.|||||||||||.||.|||.||.|.||.||
BL03653___yku 685 ATTCCCGTATTCGGTCCTTTGATTACGCCTCCGTACGGAGAAATTTATAC 734
BSNT_02353___ 735 AGAGGGAATGTATCAAACGGGCAGCACTCATATTTACGTAAACCGAGGCC 784
.||.|||||||||.||||.|.|.|.|...|.||.||.||.||.|||||..
BL03653___yku 735 GGAAGGAATGTATGAAACAGCCGGAATGAAAATCTATGTCAATCGAGGAA 784
BSNT_02353___ 785 TCGGGATGACCAGGCTGCCTTTGCGGTTTCTGGCCAAGCCTGAAATCACT 834
||||.|.||||||||||||..|.||.||||||.|.||||||||||||||.
BL03653___yku 785 TCGGCACGACCAGGCTGCCGCTCCGCTTTCTGTCAAAGCCTGAAATCACC 834
BSNT_02353___ 835 GTCTT-CACCTTAAAAAGCACAAATTAA 861
||.|| ||.|||.|| .|.|.||||
BL03653___yku 835 GTGTTCCAGCTTGAA----TCCATTTAA 858
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