Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02350 and BL03650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02350___ykuC.1.5803.seq
# -bsequence dna-align/BL03650___ykuC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02350___ykuC-BL03650___ykuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02350___ykuC-BL03650___ykuC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02350___ykuC
# 2: BL03650___ykuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1355
# Identity: 941/1355 (69.4%)
# Similarity: 941/1355 (69.4%)
# Gaps: 115/1355 ( 8.5%)
# Score: 3090.5
#
#
#=======================================
BSNT_02350___ 1 ATGGATATATTTAAAAATCGTAATTTTGTTCGTCTATTTTTCGCAGCACT 50
||||||.|.|||||||||||||||||.||.||.||.|||||||||||..|
BL03650___yku 1 ATGGATCTTTTTAAAAATCGTAATTTCGTCCGACTTTTTTTCGCAGCTTT 50
BSNT_02350___ 51 CGCTTCTCAAATGGGCACGACAGTAGGCAACATGGCCTTTGCTTTTTTTT 100
|||||||||||||||.||||||||.||.||.|||||.||.||.|||||.|
BL03650___yku 51 CGCTTCTCAAATGGGAACGACAGTCGGAAATATGGCTTTCGCCTTTTTCT 100
BSNT_02350___ 101 TGCTGGACCGATTCAGCAGCCAGCCTTCATATACGACCTTGGCGGAGCTG 150
||||.|||||.||||||||||||||..|.||||||||..|.||.||||||
BL03650___yku 101 TGCTCGACCGGTTCAGCAGCCAGCCGGCCTATACGACAATCGCCGAGCTG 150
BSNT_02350___ 151 ATGTATTCTCTT-CCGACCATATTTGTATTTCTGATCGTGGGAGTCGTCG 199
|||||||| ||| |||||..|.||.|||||..|.|||||.||.||.||||
BL03650___yku 151 ATGTATTC-CTTGCCGACGGTTTTCGTATTCTTTATCGTCGGGGTGGTCG 199
BSNT_02350___ 200 CGGACCGGTTTGACAGAAAAAAGGTGGCAGAAAATTGTGATTGGATCAGA 249
|.|||||.||||||.|.||.||.||.||.|||||.|||||||||||||||
BL03650___yku 200 CTGACCGTTTTGACCGCAAGAAAGTCGCGGAAAACTGTGATTGGATCAGA 249
BSNT_02350___ 250 GCAGGCCTGACTGTCGTGCTTTTTTTCACTTTATT-TACCGGCAA--TAT 296
||.||.|||||||||||.|||||.|| |.|||| ||.|..||| |||
BL03650___yku 250 GCGGGACTGACTGTCGTTCTTTTCTT---TGTATTGTATCTTCAAATTAT 296
BSNT_02350___ 297 TCCTCTTGTTTTTTGTA-TCTTATTTATCAGAAGCGCTGTAACAAAGTTT 345
.||.|||||.|||| || ||.||||||||||||||||.||.|||||.|||
BL03650___yku 297 ACCGCTTGTGTTTT-TAGTCCTATTTATCAGAAGCGCGGTTACAAAATTT 345
BSNT_02350___ 346 TTCTTTCCGGCAGAAAACAGTTTGGTACAAGCCATTCTGCCGAAGGAGCA 395
||||..|||||.|||...||||||||.||.||||||.|....|||||.||
BL03650___yku 346 TTCTACCCGGCCGAAGCAAGTTTGGTCCAGGCCATTTTAAGAAAGGACCA 395
BSNT_02350___ 396 TTATGCGAAAGCGGCAGGGCTTAATCAGATGCTTTTTAGCATTTTTATGG 445
.|||||.||.||.|||||.||.||.|||||||||||.|||.|.|||.|..
BL03650___yku 396 GTATGCAAAGGCTGCAGGACTGAACCAGATGCTTTTCAGCCTGTTTCTAT 445
BSNT_02350___ 446 TGTTTGGAGTCGGTATAGGCGCATTTATGTACAACACCATCGGTATTG-A 494
||||.||.||.||.||.||.||||||||||||||.||.||||| .||| |
BL03650___yku 446 TGTTCGGCGTAGGAATTGGAGCATTTATGTACAAGACGATCGG-CTTGCA 494
BSNT_02350___ 495 AGGCGCCATTATTCTTGATTTTGTCAGCTTTATCATTTCCGGGCTGCTCA 544
.||.||.||...||||||||||||.|||||||||.|.|||||..|..|.|
BL03650___yku 495 TGGAGCAATCGCTCTTGATTTTGTGAGCTTTATCGTCTCCGGCTTTTTAA 544
BSNT_02350___ 545 TCCGCAGCTGCCGGATTCCAAAAGAAGCCCGACAGCCAAACGGTGCATTC 594
||||...||||...||.||....|.|||.||..||||.|||| |.|.|.
BL03650___yku 545 TCCGTTCCTGCGATATACCGCTTGCAGCGCGGAAGCCGAACG--GAAATA 592
BSNT_02350___ 595 A--GCTGGAGAAAGACTTCTGTTAAGGATTCAATAAATGACTTTAGAGAA 642
| ||||||.|||.|...|.||.||.|||||.||....||.||||..|||
BL03650___yku 593 AAGGCTGGAAAAACATGACCGTCAAAGATTCGATGCGCGATTTTAAGGAA 642
BSNT_02350___ 643 GGCATCCTCTATATTTTAAAAAACAAATTGCTGGCATCTCTTATTTTTGG 692
||||||.|.|||||.||||||||.||||||||.||.||||||.|.||.||
BL03650___yku 643 GGCATCGTTTATATATTAAAAAATAAATTGCTTGCCTCTCTTGTATTCGG 692
BSNT_02350___ 693 CTTCTTTATTTTTGGATTTGTCAATGGAGGA--TTCGCCGTATTGCCGAT 740
.|..||||||||.||..||||.|..||.||| |||| ||..|||||||
BL03650___yku 693 ATATTTTATTTTCGGGCTTGTAAGCGGCGGACTTTCG--GTTCTGCCGAT 740
BSNT_02350___ 741 GTTTACAATGAAATATGGATTGGCGCCTGACCGTTATGAGTGGCATACGT 790
|||||.||||||.||||...||.|.||||||.||||||||||||||||.|
BL03650___yku 741 GTTTAAAATGAAGTATGAGCTGTCCCCTGACAGTTATGAGTGGCATACTT 790
BSNT_02350___ 791 CTGTATTTACGATCGCACTCGGGTTTGGGCTGCTGGCAGGCAGCGTAATC 840
|..|.||.||.||||.|||.||..|.||.||..||.|.||.|..|...||
BL03650___yku 791 CCCTCTTCACAATCGTACTGGGCATCGGACTTTTGACTGGGATTGCCGTC 840
BSNT_02350___ 841 G-------GCACGATCATCTCTAAAAAAGTGAAGCCG-----CACTTTTT 878
| ||.||| .||||||||||||||| || |
BL03650___yku 841 GCCGCCCTGCTCGA-------AAAAAAAGTGAAGCCGGCATACA-----T 878
BSNT_02350___ 879 AATGTCGATACCGATTTTCATTGCAGGTTTGC--TGATCTTCGTCCTCGG 926
.|||||..|.||||||||.||.||.|| ||| |.|||.||.|.||.||
BL03650___yku 879 GATGTCAGTCCCGATTTTTATCGCGGG--TGCCTTTATCATCCTGCTTGG 926
BSNT_02350___ 927 CT----ACACCAATATTTTATG--GGTGTATTACGCGGCAGCTTTTGCAC 970
|| |.|.|||| || .||.||.|||.||||.||.||| |
BL03650___yku 927 CTTTACAGATCAAT------TGCCCGTATACTACTCGGCTGCATTT---C 967
BSNT_02350___ 971 T----GGGAATGTGCATCGGACCGATCAACATTGCAATCGGAGGCTGGAT 1016
| ||| ||.||||||||.||||||||||..||..|.||.||||||||
BL03650___yku 968 TTGCCGGG-ATATGCATCGGGCCGATCAACACAGCTCTTGGCGGCTGGAT 1016
BSNT_02350___ 1017 GCCCAAAATTGTTCATCCAAAACTGATGGGACGTGTAAGCGGCATGCA-G 1065
.||||||||.||.|||||||..|||||||||.|.||.||||| .||.| .
BL03650___yku 1017 TCCCAAAATCGTCCATCCAAGGCTGATGGGAAGGGTCAGCGG-GTGGACC 1065
BSNT_02350___ 1066 GACCCTTTTATGATGTTTGCACAGTCTTTGACACTTGGCTTAGTCGCGCT 1115
||.||..|.|..|||.|.||.||.||.|...|.||||||.|..| ||||
BL03650___yku 1066 GATCCGCTGACAATGCTGGCGCAATCCTCAGCGCTTGGCATGAT--CGCT 1113
BSNT_02350___ 1116 GT--TATTCCC--TAAGTTTGTTTCA-----AACATTGATTATCTTTATT 1156
|| ||||||| .|| ||| .|..|.||||||.|.||||
BL03650___yku 1114 GTCCTATTCCCGGGAA-------TCATCGCCGATGTGGATTATATATATT 1156
BSNT_02350___ 1157 ACGGCATGGGTGTTATTATCCTGCT-----CGTTTTTATTTTTTATTTTA 1201
|||||.|||..|..|||||.||||| || .|.|..||.||||
BL03650___yku 1157 ACGGCTTGGCGGGAATTATTCTGCTGGCGGCG-----CTGTACTACTTTA 1201
BSNT_02350___ 1202 TTGCACTGCCAAAATACAGTGCTCAGGCTGTGGAAGTGAATGTTCAGGAA 1251
|.||.|||||.||||..||.||..||..||.||||.|..|.|||||.|..
BL03650___yku 1202 TCGCCCTGCCTAAATTAAGCGCCGAGAGTGCGGAAATCGACGTTCAAGCG 1251
BSNT_02350___ 1252 GCATTTCAAGAACAGCCGAAAA-----AGAAGGCAAGA-----TCTG--- 1288
||..| |||.||.|.|||| |.|||..||.| ||||
BL03650___yku 1252 GCGCT----GAAGAGACAAAAAAATACAAAAGCGAAAATGAACTCTGTTT 1297
BSNT_02350___ 1289 TATAA 1293
|||||
BL03650___yku 1298 TATAA 1302
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