Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02344 and BL03647
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02344___patA.1.5803.seq
# -bsequence dna-align/BL03647___patA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02344___patA-BL03647___patA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02344___patA-BL03647___patA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02344___patA
# 2: BL03647___patA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1194
# Identity: 900/1194 (75.4%)
# Similarity: 900/1194 (75.4%)
# Gaps: 36/1194 ( 3.0%)
# Score: 3326.5
#
#
#=======================================
BSNT_02344___ 1 ATGGAACATTTGCTGAATCCGAAAGCAAGAGAGATCGAAATTTCAGGAAT 50
||||||||||||||.|||||.||.|.||.|||.||||||||.|||||.||
BL03647___pat 1 ATGGAACATTTGCTTAATCCAAATGTAAAAGAAATCGAAATCTCAGGGAT 50
BSNT_02344___ 51 ACGCAAATTCTCGAATCTTGTAGCCCAACACGAAGACGTCATTTCACTTA 100
.|||||.|||||.||.||||||.||||..|||||.||||.||.||..|.|
BL03647___pat 51 CCGCAAGTTCTCAAACCTTGTATCCCAGTACGAAAACGTAATCTCTTTAA 100
BSNT_02344___ 101 CAATCGGCCAGCCTGATTTTTTCACACCGCATCATGTGAAAGCTGCCGCA 150
|||||||||||||||||||.|||||.||.||.|||||.|||...|||||.
BL03647___pat 101 CAATCGGCCAGCCTGATTTCTTCACCCCCCACCATGTCAAACAGGCCGCC 150
BSNT_02344___ 151 AAAAAAGCCATTGATGAAAACGTGACGTCATATACTCCGAATGCCGGCTA 200
||||||||.||.|||||.||....||.||.||.||||..||.|||||.||
BL03647___pat 151 AAAAAAGCGATAGATGAGAATCAAACATCCTACACTCACAACGCCGGATA 200
BSNT_02344___ 201 -CCTGGAGCTGAGACAAGCTGTGCAGCTTTATATGAAGAAAAAAGCGGAT 249
||| ||||||||.||.|||||.|||||||||||||||||||||||.|||
BL03647___pat 201 TCCT-GAGCTGAGGCAGGCTGTACAGCTTTATATGAAGAAAAAAGCCGAT 249
BSNT_02344___ 250 TTCAACTATGATGCTGAATCTGAAATTATCATCACAACAGGCGCAAGCCA 299
||.||.|||||.||.|||...||.|||||..|.|||||||||||.|||||
BL03647___pat 250 TTAAATTATGAAGCGGAAAGCGAGATTATTGTGACAACAGGCGCCAGCCA 299
BSNT_02344___ 300 AGCCATTGATGCTGCATTCCGGACGATTTTATCTCCCGGTGATGAAGTCA 349
.||.||.|||.|.||||||||.||||||||||||||.||.||||||||||
BL03647___pat 300 GGCTATCGATTCGGCATTCCGCACGATTTTATCTCCGGGCGATGAAGTCA 349
BSNT_02344___ 350 TTATGCCAGGGCCTATTTATCCAGGCTATGAACCTATTATCAATTTGTGC 399
||.|.||.|||||..|.||.||.||||||||.||.||.|||||..|||||
BL03647___pat 350 TTCTTCCGGGGCCGGTATACCCCGGCTATGAGCCGATCATCAAAATGTGC 399
BSNT_02344___ 400 GGGGCCAAGCCTGT-CATTG----TTGATACTACGTCACACGGCTTTAAG 444
|| |||.|.| ||||| ||||.||.|||||.||||||||||||
BL03647___pat 400 GG-----AGCGTCTCCATTGATCATTGACACCACGTCCCACGGCTTTAAG 444
BSNT_02344___ 445 CTTACCGCCCGGCTGATTGAAGACGCTCTGACACCCAACACCAAGTGTGT 494
||.||.||.....||||.||.||.||.|||||.||.||.||.||.|||||
BL03647___pat 445 CTGACAGCAAAATTGATCGAGGAAGCGCTGACGCCGAAGACAAAATGTGT 494
BSNT_02344___ 495 CGTGCTTCCTTATCCGTCAAATCCTACCGGCGTGACTTTATCTGAAGAAG 544
.||.|||||.||||||||.|||||.||.||..||||..|.||.|||||||
BL03647___pat 495 TGTTCTTCCATATCCGTCGAATCCGACGGGAATGACGCTGTCCGAAGAAG 544
BSNT_02344___ 545 AACTGAAAAGCATTGCAGCCCTTTTAAAAGGCAGAAATGTCTTCGTATTG 594
|.|||||...|||.||..||||||||||||||.||||.|||||.||..|.
BL03647___pat 545 AGCTGAAGGACATCGCCTCCCTTTTAAAAGGCCGAAACGTCTTTGTGCTC 594
BSNT_02344___ 595 TCCGATGAAATATACAGTGAATTAACATATGACAGACCGCATTACTCCAT 644
||.||||||||||||||.|||.|.||.|.||||||||||||..||||.||
BL03647___pat 595 TCAGATGAAATATACAGCGAACTCACTTTTGACAGACCGCACCACTCGAT 644
BSNT_02344___ 645 CGCAAACCATTTGC---GGGATCAAACAATTGTCATTAAC-GGCTTGTCA 690
||||| .|.||| ||||.||.||.||.|||||...| ||||| ||.
BL03647___pat 645 CGCAA---CTGTGCTAAGGGACCAGACGATCGTCATCGGCGGGCTT-TCC 690
BSNT_02344___ 691 AAATCACACAGCATGACCGGTTGGAGAATTGGATTTTTATTTGCACCGAA 740
|||||.|||||||||||.||.||||||||.||.|||||.||.||||||||
BL03647___pat 691 AAATCCCACAGCATGACGGGCTGGAGAATCGGGTTTTTGTTCGCACCGAA 740
BSNT_02344___ 741 AGACATTGCAAAGCACATTTTAAAGGTTCATCAATACAATGTATCGTGCG 790
.||.||.||||||||.||||||||.||.|||||||||||.|||||.||||
BL03647___pat 741 GGAAATCGCAAAGCATATTTTAAAAGTCCATCAATACAACGTATCTTGCG 790
BSNT_02344___ 791 CCTCATCCATTTCTCAAAAAGCCGCGCTTGAAGCTGTCACAAACGGCTTT 840
|.|||||.||||||||||||||.||.||.|||||.|||||.|||||.|||
BL03647___pat 791 CTTCATCGATTTCTCAAAAAGCTGCTCTGGAAGCCGTCACCAACGGGTTT 840
BSNT_02344___ 841 GACGATGCATTGATTATGAGAGAACAATACAAAAAACGTCTCGACTATGT 890
||.||.||..||||.|||.|.||.||.||.||||||||.||.|||||.||
BL03647___pat 841 GATGACGCTCTGATCATGCGCGAGCAGTATAAAAAACGGCTGGACTACGT 890
BSNT_02344___ 891 TTATGACCGTCTTGTTTCCATGGGACTTGACGTAGTTAAACCGTCCGGTG 940
.||.|||.|.|||||..|.|||||.||.||.||..||||||||||.||.|
BL03647___pat 891 GTACGACAGACTTGTGACGATGGGCCTCGATGTGATTAAACCGTCGGGAG 940
BSNT_02344___ 941 CGTTTTATATCTTCCCTTCTATTAAATCATTTGGAATGACTTCATTTGAT 990
|.||.||.||.|||||.||.||.|||||.|||||||||.||||.|||||.
BL03647___pat 941 CATTCTACATTTTCCCGTCCATCAAATCGTTTGGAATGTCTTCCTTTGAC 990
BSNT_02344___ 991 TTTAGTATGGCTCTTTTGGAAGACGCTGGTGTGGCACTCGTGCCGGGCAG 1040
||..|.|||.|.|||.|.|||||.|..||..|.||..|||||||||||||
BL03647___pat 991 TTCTGCATGTCGCTTCTTGAAGAAGAGGGGCTTGCGATCGTGCCGGGCAG 1040
BSNT_02344___ 1041 CTCATTCTCAACATATGGTGAAGGATATGTAAGGCTGTCTTTTGCATGCT 1090
|||.||.||...|||.||.|||||.|||||.|||.|.||||..||||..|
BL03647___pat 1041 CTCGTTTTCTGAATACGGGGAAGGCTATGTGAGGATCTCTTACGCATATT 1090
BSNT_02344___ 1091 CAATGGACACGCTGAGAGAAGGCCTGGACCGTTTAGAATTATTTGTATTA 1140
|....||.|||||.||.|||||.||.|||||..|.||.|..|||||.||.
BL03647___pat 1091 CTCCTGATACGCTAAGGGAAGGTCTTGACCGGCTGGAGTCCTTTGTTTTC 1140
BSNT_02344___ 1141 AAAAAACGTGAAGCAATGCAGACGAT--AAACAACGGCGTTTAA 1182
||.|| ||.||||| |||| |.||.||| |||
BL03647___pat 1141 AATAA----GAGGCAAT-----CGATACAGACTACG-----TAA 1170
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