Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02291 and BL03636
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_02291___ykvA.1.5803.seq
# -bsequence dna-align/BL03636___ykvA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02291___ykvA-BL03636___ykvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02291___ykvA-BL03636___ykvA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02291___ykvA
# 2: BL03636___ykvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity: 198/385 (51.4%)
# Similarity: 198/385 (51.4%)
# Gaps: 119/385 (30.9%)
# Score: 439.0
#
#
#=======================================
BSNT_02291___ 1 ---------ATGAAGAAAAAGAAAGCAAT---AATGCTCGGAGCGGCAGG 38
||||.|||| |||.||.| ||.||||.|
BL03636___ykv 1 ATGCGCCAAATGATGAAA---AAACCAGTTTCAAAGCTCCG--------- 38
BSNT_02291___ 39 CGGAAAAGCGATTTT------AAAGAGGAAAAACCGAAAAAAATGTATTC 82
||.||..||| |||||.|.| |||||
BL03636___ykv 39 -----AACCGTCTTTGCCGTGAAAGAAGCA---------------TATTC 68
BSNT_02291___ 83 AGCACATCACTATTTTTTTTCAG---ATGCTTCGCGATTGGCGAAATGGC 129
|| .|.|| .||||.|||||||| || ||.|.|..|||.||||.||.
BL03636___ykv 69 AG-GCCTC-TTATTGTTTTTCAGGGCAT--TTAGAGCCTGGAGAAAGGGA 114
BSNT_02291___ 130 GACTATCC-----TCGGTCACAGGTTAAAACACTTTTGCTGTTAACTGCC 174
|||||.|| || |.|...||||||.|||||||| |||
BL03636___ykv 115 GACTACCCCTTATTC-----CCGAAAAAAACAATTTTGCTG------GCC 153
BSNT_02291___ 175 ------GCAATTCTGTATAT--CGTCATGCCGCTCGATATCATTCCAGAC 216
|||.||.|.|||.| .|||| |||.|||||.|.||.||.||.
BL03636___ykv 154 GCGCTGGCATTTATCTATGTGCTGTCA--CCGATCGATTTGATCCCCGAT 201
BSNT_02291___ 217 GTAATCCTCG-----GTCTTGGGTTCATTGACGATGCAGCTGTTTTAGGT 261
| |.|||| ||| ||.|...||||.|||||.|||||..|.|.|
BL03636___ykv 202 G---TTCTCGCAGGCGTC--GGCTGGCTTGATGATGCGGCTGTGCTCGCT 246
BSNT_02291___ 262 TTGATTTGGACACTGATTAAAAAAGAACTGTCAC-AGTATGAAA------ 304
||..|.|..|..|..||.|..|||||.||| .|| .||.|||||
BL03636___ykv 247 TTTCTCTTCAGGCAAATCACCAAAGAGCTG-GACGGGTTTGAAACACATC 295
BSNT_02291___ 305 ----AGTG-GCGT---TTGCAAT--AA-------- 321
||.| |.|| ||.|||| ||
BL03636___ykv 296 TAACAGGGAGAGTAAATTACAATGGAAAACAATAA 330
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