Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02955 and BL03635

See Amino acid alignment / Visit BSNT_02955 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_02955___fosB.1.5803.seq
#    -bsequence dna-align/BL03635___fosB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02955___fosB-BL03635___fosB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02955___fosB-BL03635___fosB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02955___fosB
# 2: BL03635___fosB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 494
# Identity:     299/494 (60.5%)
# Similarity:   299/494 (60.5%)
# Gaps:         103/494 (20.9%)
# Score: 825.5
# 
#
#=======================================

BSNT_02955___      1 GTGGA----GATAAAA-----GGAATCAATCA---CTTGCTATTTTCAGT     38
                     .||||    .||||||     ||.||||||||   ||||   |||||.||
BL03635___fos      1 ATGGAAAACAATAAAATCCTCGGCATCAATCATCTCTTG---TTTTCGGT     47

BSNT_02955___     39 TTCGCATTTGGATAC--ATCGATTGATTTTTATCAAAAAGTGTTTGATGC     86
                     .||..|..||  |.|  .||.|||...||.|||.||||.|||||||||||
BL03635___fos     48 CTCTGACCTG--TCCGTCTCTATTTCATTCTATGAAAAGGTGTTTGATGC     95

BSNT_02955___     87 AAAGCTTTTG----GTAAAGG--GAAGAACAACTGCATATTTTGACATGA    130
                     .|||    ||    |||||.|  | |||| |||.||.|||||||||.|||
BL03635___fos     96 CAAG----TGGCTCGTAAAAGCCG-AGAA-AACCGCTTATTTTGACCTGA    139

BSNT_02955___    131 ACGGCATCTGGCTAGCGCTTAATGAAGAACCAGACATCCCGAGAAATGAC    180
                     |||||||||||||.||..|.||.|||||...||||||     .|||.|||
BL03635___fos    140 ACGGCATCTGGCTCGCATTCAACGAAGAGAAAGACAT-----TAAAAGAC    184

BSNT_02955___    181 ATTAAGCTT-------TCTTATACCCATATTGCTTTTACAATTGAAGATC    223
                     |..||  .|       |||||.||||||||.||.|||.|.||..||   |
BL03635___fos    185 AGGAA--ATCCACGACTCTTACACCCATATCGCGTTTTCGATCCAA---C    229

BSNT_02955___    224 ATGA--ATTTGAGG---AGGTATCAGCTAAATTAAAAAGACTT---CATG    265
                     |.||  |||||..|   .||.|..||  ||||| |.|.||.||   |  |
BL03635___fos    230 AGGAAGATTTGCCGTTCTGGGAAAAG--AAATT-ACACGATTTAGGC--G    274

BSNT_02955___    266 TCAATATTCTGCCTGGCAGAGAACGAGATGAACGCGATCGAAAATCAATT    315
                     |.|||.|.|||...||||||.||||..|||||.|.||..||.|.||||||
BL03635___fos    275 TTAATGTGCTGAAGGGCAGAAAACGGCATGAAGGAGACAGAGATTCAATT    324

BSNT_02955___    316 TATTTTACCGACCCTGACGGCCACAAATTTGAATTTCATACCGGAACCCT    365
                     |||||..|.||.||.||||||||.||.||.||..||||.||.||  |.||
BL03635___fos    325 TATTTCTCAGATCCAGACGGCCATAAGTTCGAGCTTCACACAGG--CTCT    372

BSNT_02955___    366 TCA--AGACAGGCTTCGATATTA-CAAACAAGAAAAAACGCAT-------    405
                     ..|  .|||.|.||||.|||.|| |||| |.||||||.|||||       
BL03635___fos    373 GTATTTGACCGTCTTCAATACTATCAAA-ATGAAAAACCGCATCTTTCAT    421

BSNT_02955___    406 ---ATGCA-------------CTTTTTATGA-------------    420
                        |||.|             ||.|||||||             
BL03635___fos    422 TTCATGAAGGCCACATCAAGGCTCTTTATGACAGAAACAAATAA    465


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