Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02256 and BL03628
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02256___ykoW.1.5803.seq
# -bsequence dna-align/BL03628___ykoW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02256___ykoW-BL03628___ykoW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02256___ykoW-BL03628___ykoW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02256___ykoW
# 2: BL03628___ykoW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2588
# Identity: 969/2588 (37.4%)
# Similarity: 969/2588 (37.4%)
# Gaps: 1273/2588 (49.2%)
# Score: 2473.0
#
#
#=======================================
BSNT_02256___ 0 -------------------------------------------------- 0
BL03628___yko 1 GTGACAGAAGTTCTTGGTGAATATAATGGATGGCTCGTCCTATTATCCTA 50
BSNT_02256___ 0 -------------------------------------------------- 0
BL03628___yko 51 TTTCACTGCAGTTTTGGCAGCTTATACAGCCCTTGATTTATCTGAACGGG 100
BSNT_02256___ 0 -------------------------------------------------- 0
BL03628___yko 101 TCGTACATACAAAAGGCAGGAAAAATATCGGATGGCTTTTGGCCGGTTCC 150
BSNT_02256___ 1 ------ATGGGATTCGGTATTTGGTCAATGCATTTTGTAGGGATGATGGC 44
|||||..|.||.||.|||||.|||||.|||.|.||||||.||.|
BL03628___yko 151 CTCACGATGGGGCTTGGCATCTGGTCTATGCACTTTATCGGGATGGTGTC 200
BSNT_02256___ 45 CGTCCATATGGAAATGCCG-----ATGACATATG------AATTCATGCC 83
..|.|| ||.| ||.| ||||.|||.| ||||| |.|
BL03628___yko 201 ATTTCA----GACA-GCAGAAGAAATGAAATACGATTTGAAATTC--GTC 243
BSNT_02256___ 84 TT------TAATGGCAGCCATTGGCGCATCTGTTTCG--GGATCATTTGT 125
|| .|.|| |||.||| ||||| ||.||..|..|
BL03628___yko 244 TTGTTGTCGATTG-------TTGCCGC-----TTTCGCAGGCTCGCTCAT 281
BSNT_02256___ 126 GTCATTATATTTTGTCAGCCGGAACATTCTTACATATTAC---------- 165
.|||||.|||.|.|| ||| |.|.|.|..||
BL03628___yko 282 CTCATTTTATGTGGT------GAA-----TGAAAAAAAACCGACGAATGG 320
BSNT_02256___ 166 -AGACTGCTTACCGGATCAGTTG---TGCTTGGCGCATCTATTGCTTCTA 211
||||||....||||.||..||| ||....||||| |||||.||.|
BL03628___yko 321 AAGACTGGCGGCCGGGTCCCTTGCAATGGGATGCGCA---ATTGCCTCCA 367
BSNT_02256___ 212 TGCACTATATCGGAATG--------------TCTGCCATT---------T 238
||||.|.||||||.||| |.||.||.| |
BL03628___yko 368 TGCATTTTATCGGGATGGAAGCAATGGAAAATATGACAATCGTCTATCAT 417
BSNT_02256___ 239 CCCGGGTAATGATTATTTACGAACCGATTTTATTTACAGTTTCAATTATC 288
|||| ||.||||.| |||..|.| |||.||
BL03628___yko 418 CCCG--------TTCTTTATG--CCGCCTCT-TTTGCA------------ 444
BSNT_02256___ 289 ATTGCGATTGCAGCCTCTTTCGTCT-CGTTAAAAATATTCTTTGACTTGG 337
||.||.|||...|||||.|||| || |.||||||.|.|...|||..||.|
BL03628___yko 445 ATCGCCATTTTTGCCTCCTTCG-CTGCCTTAAAACTGTCAGTTGTATTCG 493
BSNT_02256___ 338 CCGTAAAAAAAC--ATTCTGAGCATCTT----ATA---TTCTATAAAGTC 378
|| |||||||| .|||| || ||| |||..||||.||
BL03628___yko 494 CC--AAAAAAACCGGTTCT-------TTTCGGATATTGTTCATTAAAATC 534
BSNT_02256___ 379 GTCAGTTCAATTGTAATGGGCATTGGGATTTCGGGCATGCACTACACAGG 428
|..||..|..||.||||||||...|.||||||.|||||||||||.|||||
BL03628___yko 535 GGAAGCGCGCTTTTAATGGGCGGAGCGATTTCCGGCATGCACTATACAGG 584
BSNT_02256___ 429 GATGCTTGCGGCAAC---TTTCCATAAGGACATGGCT--CCGCCCGGA-- 471
.|||...||.||.|| ||| ||||||| |.||...||
BL03628___yko 585 AATGTCAGCAGCTACGCTTTT---------CATGGCTGACAGCGTTGACA 625
BSNT_02256___ 472 -AGCCATATGGAGGTGCAAA-------CGTTTCATTGGTCAATTT----- 508
||.| ||||.||| || ||||..|.|||.||.|.|
BL03628___yko 626 CAGGC-TATGAAGG----AATCGATACCGTTGAACTGGGCATTATGATCG 670
BSNT_02256___ 509 ---TTGT--------TACTTTAA-------TTATTTT-------TTGTAT 533
|||| |.|||.|| |.||||| ||..||
BL03628___yko 671 TGCTTGTCAGCCTGATGCTTCAATGCTTCTTGATTTTCGGCGCCTTCAAT 720
BSNT_02256___ 534 -CCAAACGTTATTGTTATTCAGTTCCCATGCAGATCGAAAGTTTATTAAA 582
.|||||| .|.|.|.| |.||.|||||||
BL03628___yko 721 GACAAACG----------CCTGCTGC--TTCATATCGAAA---------- 748
BSNT_02256___ 583 CAGAGCGAACGCATAAAGGATAACGAACAGCGATTTCAGTCTTTAATCGT 632
|| .|.||.||||||||..||||.||.|||||.||.|||..
BL03628___yko 749 -------AA---GTCAAAGATAACGAGGAGCGGTTCCAGTCCTTGATCAA 788
BSNT_02256___ 633 CCACAATATTGATGCAATTTTTATTTTATCATTAGAAGGAGACATAATAT 682
||||||.||||||.|.||.|.|.||||.||..|.|||||..|..|..|.|
BL03628___yko 789 CCACAACATTGATCCGATCTATGTTTTTTCGCTTGAAGGCAAGCTGCTTT 838
BSNT_02256___ 683 CTTCCAA-TCA-CGCTGG------------TGAGGAAATGATCAGCAAAT 718
|..|||| ||| || || |||..|||| |..|||
BL03628___yko 839 CCGCCAATTCATCG--GGATACAGCCTTCTTGAAAAAAT-----GGGAAT 881
BSNT_02256___ 719 T-------------TGGCTTCAGCAT----GCATGACTGGAGGA--ATTA 749
| ||.||||.|..| ||| |||||| ||.|
BL03628___yko 882 TGAACCCGAGCGCCTGTCTTCCGTTTTTCGGCA-----GGAGGATCATGA 926
BSNT_02256___ 750 CA--CATCACTGAAGGTTAAGCGCCTTTTTGAGCAAGTTAAAAAAGATAA 797
|| |..|.|.|..|||| |||| |||||..||||.||.||
BL03628___yko 927 CAGGCTGCTCGGCTGGTT-----CCTT------CAAGTCCAAAATGAAAA 965
BSNT_02256___ 798 ACAAGCGATGAACAGCGATA--GCGATC-TTATCACTGAAAAAGGCCAGT 844
|||.||.||.|||.|||||| ||.||| ..||..|||||||..|| |
BL03628___yko 966 ACAGGCCATCAACCGCGATACGGCAATCGCGATAGCTGAAAAGCGC---T 1012
BSNT_02256___ 845 TTCACTTAAATATTACGCTTATACCTGTTGAGGTCAATCAGGAACTAGAC 894
||.|.||||||.|.|||||.|||||.||..|.||||...||.|.||.|||
BL03628___yko 1013 TTGATTTAAATGTGACGCTGATACCGGTGTATGTCAGAAAGCAGCTTGAC 1062
BSNT_02256___ 895 AGCATTTATGTCATTTGTAAAGACATGACGAAGCAGTACAAAGCAGAAAA 944
||||||||||||||.||.|||||.|||||.||.|||....||||||||..
BL03628___yko 1063 AGCATTTATGTCATATGCAAAGATATGACAAACCAGCGTGAAGCAGAACG 1112
BSNT_02256___ 945 AGAAATCCATAGAATGGCTCATTATGATTCGCTTACAGACTTACCTAACA 994
..||||||||||||||||.||.|||||..||.|.||.||.||.||.||||
BL03628___yko 1113 CAAAATCCATAGAATGGCCCACTATGACGCGTTGACGGATTTGCCAAACA 1162
BSNT_02256___ 995 GAAGGCATGCCATCTCTCATCTAACAAAGGTGCTGAATCGCGAGCATTCC 1044
|||||.||||..||...|.|||..||||.||.||.||.||..||.|
BL03628___yko 1163 GAAGGTATGCAGTCGACCGTCTGGCAAATGTTCTAAAGCGGCAGGA---- 1208
BSNT_02256___ 1045 TTGCATTATAAC----ACTGTTGTATTCTTTCTTGACTTAAACCGGTTTA 1090
.|| ||.|..||.||.|||.|.||.||||||||.||.|
BL03628___yko 1209 ---------GACAGGGACGGCCGTGTTGTTTTTGGATTTAAACCGTTTCA 1249
BSNT_02256___ 1091 AAGTGATTAACGATGCATTAGGGCATAATGTCGGTGATCAATTGCTTCAG 1140
|||||.||||.||.||..||||.||..|.|||||.||.| ||||.|.|
BL03628___yko 1250 AAGTGTTTAATGACGCCCTAGGCCACGACGTCGGGGACC---TGCTGCTG 1296
BSNT_02256___ 1141 TT---TGCGGCTAAACGTTTG--TCATCTGTAGTCCCTGATAACGGATTT 1185
.| |||.||..|.|||||| .|| |||| ||.||..||.|.||.|||
BL03628___yko 1297 GTGGCTGCTGCACAGCGTTTGGCGCA-CTGT-GTGCCCAATGAAGGCTTT 1344
BSNT_02256___ 1186 ATCGCCCGTCTTGGCGGTGATGAATTTATTATTATATTAACAGACG--CC 1233
||||||||.||.|||||.|||||||||||.||| |.|| ||
BL03628___yko 1345 ATCGCCCGGCTGGGCGGCGATGAATTTATCATT---------GTCGCTCC 1385
BSNT_02256___ 1234 AATACAGGAACAGG---CGA--AGCAGATGTTTTAGCAAGAAAAATTATC 1278
..|||| ||| ||| |||.|| |.||..||.|.|||
BL03628___yko 1386 TTTACA-----AGGGATCGATCAGCTGA--------CCAGGCAATTGATC 1422
BSNT_02256___ 1279 CAAAAATTCA-----AAAAACCTTTCAAGATTCAAGATCA-CACCCTTGT 1322
|.||| |||..|||||....|||.||||.|| |.|| |
BL03628___yko 1423 -----AGTCAGTTTGAAACGCCTTTTCGCATTAAAGAGCATCGCC----T 1463
BSNT_02256___ 1323 C---ACATCTGTCAGTATCGGGATTGCGATATCTCCAAAAGACGGGACTG 1369
| |||||.|||||.|||||.||.||..|.|||||..|.||.||.||.|
BL03628___yko 1464 CAAAACATCCGTCAGCATCGGAATCGCCGTTTCTCCGGACGATGGAACAG 1513
BSNT_02256___ 1370 ATGGCCTTGAATTGATGAAAAAGGCTGATATGGCGATGTATGCGGCTAAA 1419
|.|||..|||..||||||.|||.||.||.|||||.|||||.||.|| |||
BL03628___yko 1514 ACGGCGATGAGCTGATGAGAAAAGCCGACATGGCTATGTACGCCGC-AAA 1562
BSNT_02256___ 1420 GAACGA-AACAAAAGCAAATACAGATACTATTCTTTTTCAATTGGCAACA 1468
|.||.| |.|..|||||.|||..|.||||..||.|.||| ..|.||.|.|
BL03628___yko 1563 GCACAAGAGCGTAAGCAGATATCGGTACTTCTCGTCTTC-CCTCGCCAGA 1611
BSNT_02256___ 1469 AAGAA---ACCGTCAAGCTTAACCAAGAGATGGTACTCAGA---GAAGCA 1512
||||| |||||| |..|| |||.||.|.|| || |||..|
BL03628___yko 1612 AAGAACAGACCGTC-----TTTCC---AGAAGGAAATC-GAGCTGAACTA 1652
BSNT_02256___ 1513 ATCGAAAACGATAGATTTGTCTTGCATTATCAGCCGCAATTCAGTGTAAA 1562
|
BL03628___yko 1653 A------------------------------------------------- 1653
BSNT_02256___ 1563 AAAACAAAAAATGACAGGAGCAGAAGCACTGATACGCCTTGTGACACCAG 1612
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1613 ACGGGCAACTGCGTCCGCCCGGAGAATTTATCGGTGTCGCAGAAGAAACG 1662
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1663 GGACTTATTATTGATATCGGAAAGTGGATTATAGATGAAGCATGCAAGCA 1712
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1713 GGCAAGGATTTGGCACAATAAAGGCTATGATCTTTCTGTCGCCATTAATA 1762
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1763 TTTCCGCCAGACAGTTCCAATCCGAAGATCTGATTCCCCTCATCAAGGAT 1812
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1813 ACGCTTAATAAATACCAGCTTCCTCCGCAGCTTCTTGAAGTGGAGGTGAC 1862
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1863 GGAAAGCATGACAATGGACAATCTCGATCACTCCAAAAAGGTTTTGTCAT 1912
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1913 CCCTTAAAGAATTAGGAATCAGAATCAGTATTGACGATTTCGGTACTGGT 1962
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 1963 CACAGCTCCCTTAGCTATTTGAAGGACTTCCCGATTCACAGGCTGAAGAT 2012
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 2013 TGACAAATCATTTATTGACGATATTCAGACCCATCCTAAATCAGAGCAAA 2062
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 2063 TTACCGGAGCTATTATTGCCATGGGGCATCAGCTGTCTTTGCAGGTGATT 2112
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 2113 GCCGAAGGTGTGGAAAATGCAGCTCAAAAGCAGCTTCTATATGAAAAAGG 2162
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 2163 CTGCGACCATTTGCAGGGCTTCTTTTTCAGCAGGCCAATACCTCCGGAAC 2212
BL03628___yko 1653 -------------------------------------------------- 1653
BSNT_02256___ 2213 AATTCGAACAATTCATTATTGAACAGCCGTCGCAATAA 2250
BL03628___yko 1653 -------------------------------------- 1653
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