Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02253 and BL03627
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02253___ykoV.1.5803.seq
# -bsequence dna-align/BL03627___ykoV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02253___ykoV-BL03627___ykoV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02253___ykoV-BL03627___ykoV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02253___ykoV
# 2: BL03627___ykoV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity: 628/914 (68.7%)
# Similarity: 628/914 (68.7%)
# Gaps: 70/914 ( 7.7%)
# Score: 2013.0
#
#
#=======================================
BSNT_02253___ 1 ATGCATACAATGTGGAAGGGATCGATCAGCTTCGGATTAGTAAACATCCC 50
||||||||.||||||||.||.||.||||||||.||..|.||.||.|||||
BL03627___yko 1 ATGCATACGATGTGGAAAGGCTCTATCAGCTTTGGCCTTGTCAATATCCC 50
BSNT_02253___ 51 CATCAAGCTATATGCGGCCACAGAAGATAAAGATATTAAACT----GCGC 96
|||.||.||.|.|||.||.|||||.|||||.|||||||||.| .||
BL03627___yko 51 CATTAAACTGTTTGCAGCGACAGAGGATAAGGATATTAAATTAAGGTCG- 99
BSNT_02253___ 97 AGCCTCCATAAAGAGGAT--CACGCACCAATCAAATACGAGAAAGTTTGT 144
||.|||||||| || |.|||.||.||..|.||.||.|||...||.
BL03627___yko 100 ---CTTCATAAAGA--ATGCCGCGCCCCGATTCAGTATGAAAAAAAGTGC 144
BSNT_02253___ 145 ACAAATTGCGA----AAAAACTCTTAGTCCTGATGAAATTGTGAAGGGAT 190
|||||.|||.| .|||.|.| .||.||.||.||.||.|||||.|
BL03627___yko 145 ACAAACTGCCATCAGGAAATCGC----GCCCGACGACATCGTCAAGGGCT 190
BSNT_02253___ 191 ATGAATATGTAAAAGGGAAATATGTAGTGCTGA-CGGACGAAGA-TTTAA 238
|.||||||||.|||||.|||||.||.|| ||.| |||||||.|| .|.||
BL03627___yko 191 ACGAATATGTTAAAGGCAAATACGTCGT-CTTATCGGACGATGAGCTGAA 239
BSNT_02253___ 239 AAAGCTTAAAACAGGAGCATGAGGAGAAAGCGGTTGAGATTGTTGACTTT 288
..||| |.|||.|.|||||.||.||.||.||.||.||.||||||||.|||
BL03627___yko 240 GCAGC-TCAAAGAAGAGCAGGAAGACAAGGCCGTCGAAATTGTTGATTTT 288
BSNT_02253___ 289 GTTCAGCTTCAGGAAATTGATCCGATTTACTTTAACCGCTCCTACTTTGT 338
||.|||||..|||||||.|||||.||.||.||.|||||.||.||.||.||
BL03627___yko 289 GTGCAGCTAAAGGAAATCGATCCCATCTATTTCAACCGTTCATATTTCGT 338
BSNT_02253___ 339 CGGCCCCGGGGATAATGGGACGAAGGCCTATACCCTGCTTCGTGAGGCGC 388
|||.||.||.|||||.||....||.||.||..|.||..|.||.||.||||
BL03627___yko 339 CGGACCGGGAGATAACGGTGTAAAAGCGTACTCACTTTTGCGCGAAGCGC 388
BSNT_02253___ 389 TGCGCTCAACCGGAAAGATCGGTATCGCCAATATGACAATCAGGTCAAAG 438
|..|...|||.|.|||||||||.||||||.|||||||.|||.|.|||||.
BL03627___yko 389 TCAGAAAAACAGAAAAGATCGGGATCGCCCATATGACCATCCGCTCAAAA 438
BSNT_02253___ 439 CAGCAGCTGGCGATTCTCCGTGTTTATGAAAATTGTATCGTCATGGAGTC 488
.|.|||||.||.|||||.||.||.||.|||||.||.||..|.||||||||
BL03627___yko 439 AAACAGCTCGCCATTCTTCGCGTCTACGAAAACTGCATTTTAATGGAGTC 488
BSNT_02253___ 489 TATCCATTATCCGGATGAGGTCAGAAGCGCCGCTCATGTCCCAGGTGTAC 538
.|||||.||.||.|||||||||.|||.|||.||.||.||.||.|||||.|
BL03627___yko 489 CATCCACTACCCTGATGAGGTCCGAAACGCAGCCCACGTACCCGGTGTTC 538
BSNT_02253___ 539 CTG-ATCAATCGAATGTAAACGATAAGGAACTGCAAACTGCTATTACATT 587
|.| |..||.||.| ||.|||||.||.||.||||||||.||.|||.||||
BL03627___yko 539 CGGAAGAAACCGCA-GTCAACGAAAAAGAGCTGCAAACCGCGATTTCATT 587
BSNT_02253___ 588 AATAGATGAACTGACTGCTGA-GTTTGAGCCTGAGAAATATGAAGACACG 636
||||||.||.|||||..| || .||||.||||||..||||||||||.|||
BL03627___yko 588 AATAGACGAGCTGACAAC-GACATTTGCGCCTGAACAATATGAAGATACG 636
BSNT_02253___ 637 TACCGACAGGCGCTGCTGCAAAGAGTCAACGACAAGCTTGAAAATAAAGA 686
|||.||...||||||.||.|.|.|.||||.||.||..|.||..||||.||
BL03627___yko 637 TACAGAATCGCGCTGATGGATAAAATCAAAGAGAAAATCGACCATAATGA 686
BSNT_02253___ 687 AACAGCCGTCACTCCTGATAAA----------GCGCCACCACGTGAAGAT 726
||..|||||.|| ||| ||..|.||.||.||.|||
BL03627___yko 687 ---AGGTGTCACGCC----AAATGCCGGGGCCGCCGCTCCGCGCGAGGAT 729
BSNT_02253___ 727 GTCATTGACCTGGTAAGCGCTCTGCAAGCCAGCATTGACCGAACCAGAAG 776
||.||.||.||.||.||||||||.|||||||||||.||.||.||.|.|.|
BL03627___yko 730 GTAATCGATCTCGTGAGCGCTCTCCAAGCCAGCATCGAACGGACAAAAGG 779
BSNT_02253___ 777 GCCGAACCGGGAGACACCGGCTGCCGCACCTGCA-CAAGCCGCTGAACCG 825
|||..||||||| |.||||....||.|||||| ||
BL03627___yko 780 GCCTGACCGGGA---AGCGGCGAAAGCGCCTGCAGCA------------- 813
BSNT_02253___ 826 AAAGGAGC--CGGAGATAAAAAACGAAAAACAACTAGAAAAAAAGCCTC- 872
||||||.| |.||||.|||.|| ||||||..|..|.||||||||.||
BL03627___yko 814 AAAGGAACAGCTGAGAAAAAGAA--AAAAACGTCGCGCAAAAAAGCTTCA 861
BSNT_02253___ 873 -CGGCACGTCATAG 885
.|||| ..|||.
BL03627___yko 862 GAGGCA--AAATAA 873
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