Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05102 and BL03619
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:13
# Commandline: needle
# -asequence dna-align/BSNT_05102___yvaN.1.5803.seq
# -bsequence dna-align/BL03619___rghR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05102___yvaN-BL03619___rghR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05102___yvaN-BL03619___rghR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05102___yvaN
# 2: BL03619___rghR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 458
# Identity: 269/458 (58.7%)
# Similarity: 269/458 (58.7%)
# Gaps: 106/458 (23.1%)
# Score: 745.0
#
#
#=======================================
BSNT_05102___ 1 ATG--GAAAGCTTTGGCGAACAATTACGGGCATTGCGTGAAGAGAGAAAG 48
||| ||| ||||||..|.||.|||||...|||..|.|||..||.|||.
BL03619___rgh 1 ATGACGAA--CTTTGGACACCATTTACGACAATTAAGGGAACGGAAAAAA 48
BSNT_05102___ 49 TTAACAGTCAACCAGCTGGCGACTTATTCAGGCGTAAGCGCGGCCGGCAT 98
.|.||.|||||.||.|||||||..|||||.|||||.||..||||.|||||
BL03619___rgh 49 CTGACCGTCAATCAACTGGCGATGTATTCCGGCGTCAGTTCGGCAGGCAT 98
BSNT_05102___ 99 CTCCAGAATCGAAAACGGAAAACGGGGCGTTCCCAAACCTGCCACCATCA 148
.||..||||||||||||||||.||.|||||.||.||.||.||.||.||||
BL03619___rgh 99 TTCGCGAATCGAAAACGGAAAGCGCGGCGTGCCGAAGCCGGCGACGATCA 148
BSNT_05102___ 149 AAAAACTGGCAGAGGCCTTAAAAATTCCTTATGAGGGACTTATGTACA-- 196
.|||||||||.||.||.||.|||.|.||.|||||||.|||.||| .||
BL03619___rgh 149 GAAAACTGGCGGACGCTTTGAAAGTCCCGTATGAGGAACTGATG-GCATC 197
BSNT_05102___ 197 ---AGGCT----------GGTTACA-TCGAAGAAGTGCATGAAGCCAGGG 232
||||| |..|||| ||.|.||| |||.|||| |||
BL03619___rgh 198 TGCAGGCTATATCAGCGCGTCTACAGTCCAGGAA--GCAAGAAG-CAG-- 242
BSNT_05102___ 233 CCCCTTATGA-------AACGAAGTGCAAGCTGCTTGAAAAAGCGGAGGC 275
.||||| .|||| |..|.||..|.||
BL03619___rgh 243 ----CTATGATTCCATTTACGA--------CATCGTGTCACAG------- 273
BSNT_05102___ 276 TTATGATCTGAAAAACCTTGCGCTTCTTGAGAACGAAAAGTGGCAA---T 322
||.|||.|..|..|||||.|.||..||||.|.|||||||||| || .
BL03619___rgh 274 -TACGATTTAGAGGACCTTTCTCTGTTTGACAGCGAAAAGTGG-AAGGTG 321
BSNT_05102___ 323 ATCTCAATAAAGAAGATTTGCTCAT------GCTGGATCATTATTTTTCG 366
.|.||| |||.|||| ||| .|||||..| ||.|||||
BL03619___rgh 322 CTTTCA--AAAAAAGA------CATCGAAAACCTGGACAA--ATATTTCG 361
BSNT_05102___ 367 --TTTAT--TTCAGACGAAGC------------CAAAAAACGGTCTGCTG 400
|||.| |.||| ||||| |||||| |||
BL03619___rgh 362 ACTTTCTCGTGCAG--GAAGCAAGCAGCCGAAACAAAAA--------CTG 401
BSNT_05102___ 401 ATGACTGA 408
|
BL03619___rgh 402 A------- 402
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