Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05122 and BL03616
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:14
# Commandline: needle
# -asequence dna-align/BSNT_05122___yvbI.1.5803.seq
# -bsequence dna-align/BL03616___yvbI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05122___yvbI-BL03616___yvbI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05122___yvbI-BL03616___yvbI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05122___yvbI
# 2: BL03616___yvbI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity: 469/879 (53.4%)
# Similarity: 469/879 (53.4%)
# Gaps: 279/879 (31.7%)
# Score: 1064.0
#
#
#=======================================
BSNT_05122___ 1 ATGTATTGTCCTCAA--TGCGGCCATCAAACAGATGGCGGAAATTTTTGT 48
|||...||| |||| ||||||||||||||||||||||||||.|||||.
BL03616___yvb 1 ATGACATGT--TCAAAGTGCGGCCATCAAACAGATGGCGGAAAATTTTGC 48
BSNT_05122___ 49 GAGAAATGCGGATCA--------CCGCTCC-------CCGGTCAATCAG- 82
|||.|.|||||.||| |.||..| .|||..||..||
BL03616___yvb 49 GAGCAGTGCGGGTCAAGTTTGGCCGGCGGCAGTGATGGCGGAAAAGGAGC 98
BSNT_05122___ 83 -GCT---AC-CAGCATGCAGCTCAAACT--GGAGCCGCTGCAAAACAAGC 125
||| || |.|||.||||||..|..| |||| ||.||.||||||||
BL03616___yvb 99 AGCTGAAACGCCGCAGGCAGCTAGATATGCGGAG--GCGGCGAAACAAGC 146
BSNT_05122___ 126 AGCAAAACAGTTCGGTTCATTTGTC-------TTATCCGTCCTGAAACGC 168
..| |||..|..||||.|| |||...||.||||||||.
BL03616___yvb 147 GTC-------TTCCATGTATTTTTCCTATTGTTTAAAGGTGCTGAAACGA 189
BSNT_05122___ 169 CC--TTATCAGGAATGTAAAACAACAGGCGGAGAGCAG------CTGATC 210
|| ||||| |.||||.||||| |.||||||.||| ||.|.|
BL03616___yvb 190 CCGTTTATC-GAAATGAAAAAC----GCCGGAGAACAGCACGTCCTCAAC 234
BSNT_05122___ 211 AGCGCAATCATTACGATGGT--TCTTTTCAGTTT-GCTGACCCCTTTGAT 257
||| ||||..||.||||| |.|||.|..||| |.|| ||..||||
BL03616___yvb 235 AGC---ATCACCACAATGGTGATATTTGCGCTTTCGGTG---CCGCTGAT 278
BSNT_05122___ 258 GTTTTATATT------------CTTTTTTCA----------GACGGTCCC 285
||||||| || |||.|||.| |||..|.||
BL03616___yvb 279 GTTTTAT-TTCGGCCTCAAAGGCTTCTTTGACGCCATGGGGGACTATTCC 327
BSNT_05122___ 286 GGAAG----------------CGCAA---------GTTTTACAGCAATCT 310
|| || ||||| .|||| |..|||.
BL03616___yvb 328 GG-AGTATTCGGCCGCTCCTACGCAATGCCGACATTTTTT---GATATCG 373
BSNT_05122___ 311 TCTTAGAGCC------AACCATT--TATTT-TATTTTATTTCTATTTG-- 349
||.||.|||| .|||.|| ||||| ||||||.||..||||||
BL03616___yvb 374 TCGTAAAGCCCGCTGTTACCTTTGCTATTTATATTTTCTTATTATTTGTT 423
BSNT_05122___ 350 ---------GCCTGCATGCATGCATCTTTTTCGCCCTGAAAATCGCGGGA 390
||..||.||| |||| ||| |||.
BL03616___yvb 424 TTTACATACGCAGGCGTGC--GCAT-----------------TCG-GGGT 453
BSNT_05122___ 391 AACCAAGTGTCTTTCAAGGATTCA-TTCTC--AAGATTCGGAGCGTTTCT 437
...||||.|.|.||.||||| | |.||| ..|.|||||||||.|.||
BL03616___yvb 454 GTGCAAGCGGCATTTAAGGA---AGTGCTCGGGCGGTTCGGAGCGGTGCT 500
BSNT_05122___ 438 CATACCGTTTACG--GCTATTTTGATTCTTGCC-CTTTTCTTCTTTTTAT 484
.||.|| ||.|| ||..||.|| ||.||| ||||.||| ||.|.||
BL03616___yvb 501 TATTCC--TTTCGTCGCCCTTCTG---CTCGCCGCTTTGCTT-TTATCAT 544
BSNT_05122___ 485 TACATACAGAC--ATTTGCTTTACCATA----------TTAGCCGTTGGT 522
| |||.||.|| .|||| |||| .||| ||.|||.||.|
BL03616___yvb 545 T-CATGCAAACGGGTTTG-TTTA-TATATGTTCTTTTCTTTGCCCTTTG- 590
BSNT_05122___ 523 TTAATCGGTGCATTCTTCGCC------ATTCCTCCTGCGATGCTGGGCAG 566
||| |.||||| |||||.|| |||.|
BL03616___yvb 591 -----CGG------CATCGCCTTTTTAATTCCGCC----------GGCTG 619
BSNT_05122___ 567 TTA---CCAGCATTCA-TATAAAGGGAAA------ATTGATGTCATTTAC 606
|.| |.|||..||| .|.||||.|.|| .|||||...||||||
BL03616___yvb 620 TCATCTCGAGCTATCACGAAAAAGCGGAAGGCGCTGTTGATACGATTTAC 669
BSNT_05122___ 607 TCAACG----------ATTGTG-----ATTTAT-------CTGATCATCT 634
.|.||| ||| || |||||| |.||||||
BL03616___yvb 670 GCGACGCTGATCGTCTATT-TGCTGACATTTATGTCGGTGCGGATCAT-- 716
BSNT_05122___ 635 GCGTTACATTTCAGCTTATTATCGAACACTATGTC--AAAGAAATTTTC- 681
|..|.|||| |.||.|| ||| |||.|| ||.|| ||
BL03616___yvb 717 --GGGAGATTT--GTTTCTT---GAA---TATATCGGAAGGA-----TCG 751
BSNT_05122___ 682 ----CGTTATAT-------GCTCTTTTAA 699
|..||||| |||.|||||.
BL03616___yvb 752 GAGGCTCTATATTAGGGCGGCTGTTTTAG 780
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