Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05484 and BL03610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05484___ywrO.1.5803.seq
# -bsequence dna-align/BL03610___ywrO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05484___ywrO-BL03610___ywrO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05484___ywrO-BL03610___ywrO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05484___ywrO
# 2: BL03610___ywrO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 563
# Identity: 361/563 (64.1%)
# Similarity: 361/563 (64.1%)
# Gaps: 73/563 (13.0%)
# Score: 1072.0
#
#
#=======================================
BSNT_05484___ 1 ATGAAAATATTGGTTTTGGCAGTTCATCCTCATATGGAGACCTCAGTTGT 50
||||||.||||.||..|.|||.|||||||..||||||||...||||||||
BL03610___ywr 1 ATGAAAGTATTAGTGCTCGCATTTCATCCGAATATGGAGCAGTCAGTTGT 50
BSNT_05484___ 51 CAATAAGGCGTGGGCTGAGGAATTGAGTAA-----ACATGACAATATCAC 95
.||.|..||.|..||.||...||||| || ||..|.| ||.||
BL03610___ywr 51 GAACAGAGCATTTGCAGACACATTGA--AAGACGCACCGGGC---ATTAC 95
BSNT_05484___ 96 AGTACGGGATCTTTATAAGGAATACCCGGATGAAGCGATAGATGTTGCGA 145
|.|.||.||.||||||.|||||||.||.||.||.||.||.|||||.|..|
BL03610___ywr 96 ATTGCGCGACCTTTATCAGGAATATCCTGACGAGGCCATTGATGTGGAAA 145
BSNT_05484___ 146 AGGAACAGCAGTTGTGCGAGGAATACGATCGGATTGTCTTTCAATTCCCG 195
|.|||||..|..|.||.||.|||.||||||||||.|||||.||.||.|||
BL03610___ywr 146 AAGAACAAAAACTTTGTGAAGAACACGATCGGATCGTCTTCCAGTTTCCG 195
BSNT_05484___ 196 CTATATTGGTACAGCTCTCCGCCGCTCTTGAAAAAATGGCAGGATCTTGT 245
||.||||||||||||||.|||||.|||||.||||||||||.|||.|..||
BL03610___ywr 196 CTTTATTGGTACAGCTCGCCGCCTCTCTTAAAAAAATGGCTGGACCACGT 245
BSNT_05484___ 246 GCTGACT-TATGGCTGGGCTTTTGGTTCAGAAGGAAATGC-CTT-GCATG 292
.|| .|| ||.||||||||.|..||..||.|.||.|..|| ||| || |
BL03610___ywr 246 TCT-TCTCTACGGCTGGGCATACGGAACAAACGGCACAGCGCTTCGC--G 292
BSNT_05484___ 293 GCAAGGAGCCGATGCTGGCTGTATCAACAGGGAG----CGAAGCGGAAAA 338
||||.||....|||.|.||||||||..| |||.| |||| |||..
BL03610___ywr 293 GCAAAGAATTCATGGTCGCTGTATCGGC-GGGCGCTCCCGAA---GAAGC 338
BSNT_05484___ 339 ATATCAAGCGGGCGGAGCAAATCATTACTCGATCAGTGAGCTATTGAAAC 388
.|||||.||.|||||..||||||||||..|||||||.||.||.||....|
BL03610___ywr 339 CTATCAGGCCGGCGGGTCAAATCATTATGCGATCAGCGAACTGTTACGCC 388
BSNT_05484___ 389 CATTTCAGGCCACGAGTAATCTGATCGGTATGAAGTATCTGCCTCCATAT 438
|.||||||||.||.||.||..|.|||||||..|..||.||.||.||.||.
BL03610___ywr 389 CTTTTCAGGCGACAAGCAACTTCATCGGTACTACATACCTTCCGCCTTAC 438
BSNT_05484___ 439 GTGTTCTAT-----------GGCGTGAATTATGC-AGC-TGCAGAGGATA 475
||.|||||| |||..||| .|.|| ||| |||.||.|
BL03610___ywr 439 GTCTTCTATCAAGCGGGCACGGCCGGAA-AAAGCGAGCTTGCTGAAG--- 484
BSNT_05484___ 476 TTTCACACAGTGCAAAACGGTTAGCCGAATACATTCAGCAGCCTTTTG-- 523
||||.|.|| ||||||...|||| |.||
BL03610___ywr 485 ---------GTGCGACAC---------AATACAGGGAGCA----TGTGCT 512
BSNT_05484___ 524 --------TTTAA 528
|||||
BL03610___ywr 513 GAAGTCATTTTAA 525
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