Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00995 and BL03604

See Amino acid alignment / Visit BSNT_00995 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_00995___ydhJ.1.5803.seq
#    -bsequence dna-align/BL03604___ydhJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00995___ydhJ-BL03604___ydhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00995___ydhJ-BL03604___ydhJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00995___ydhJ
# 2: BL03604___ydhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1123
# Identity:     599/1123 (53.3%)
# Similarity:   599/1123 (53.3%)
# Gaps:         326/1123 (29.0%)
# Score: 1471.0
# 
#
#=======================================

BSNT_00995___      1 ATGGAAATCAGCGATGTTATTTACGGGCACCACCATATAGACGGA----G     46
                                                             ..|||    |
BL03604___ydh      1 ----------------------------------------TTGGAGCCTG     10

BSNT_00995___     47 TGCTGGAAGAGCTTA-----TCAAAAGCGCTCCTGTGCAAAGATTAAAAG     91
                     |||||..|||.||.|     |||||||     |.||.||..|..|.||||
BL03604___ydh     11 TGCTGACAGACCTCATTCGTTCAAAAG-----CCGTTCAGCGTCTGAAAG     55

BSNT_00995___     92 GAATCTATCAAGGCGGAGCAAGCTTTT-TAGTCAAT----CAAAAGTGGA    136
                     |.||..||||.|||||.|| ..||||| |.||||||    ||    ||||
BL03604___ydh     56 GGATTCATCAGGGCGGGGC-CTCTTTTCTCGTCAATCCCGCA----TGGA    100

BSNT_00995___    137 ATGTGACCAGATATGAGCACTGCATCGGCGTAATGCTCCTCATCAAAAAG    186
                     |..|.|.|.|.|.|||||||.|||||||.||.|||||..|.|||...|.|
BL03604___ydh    101 ACATCAGCCGCTGTGAGCACAGCATCGGAGTTATGCTTTTGATCCGCAGG    150

BSNT_00995___    187 CTCGGAGGAACGATAGAAGAACAGATTGCGGGTCTGCTCCACGACGTATC    236
                     ||.||.||||...|.|||||.||.|||||.|||.||||||||||.||.||
BL03604___ydh    151 CTTGGCGGAAGCCTGGAAGAGCAAATTGCAGGTTTGCTCCACGATGTTTC    200

BSNT_00995___    237 ACACACAGCTTTTTCTCATGTGGTCGACGTTGTCTTT------GAAAATC    280
                     .||.||.||.|||||.|||||||..||.|.|||.|||      |||||  
BL03604___ydh    201 CCATACGGCATTTTCCCATGTGGCTGATGATGTATTTAACATGGAAAA--    248

BSNT_00995___    281 AAGCAGAAGACTATCATGAAAACATCTTTCAACAA---GTCATTGTTCAC    327
                         .|||||.||.||||||.|.||.||||..|||   ||||   ..||.
BL03604___ydh    249 ----CGAAGATTACCATGAACAGATGTTTCGGCAATGGGTCA---AGCAA    291

BSNT_00995___    328 TCTGAAATC-CCGGACATTTTACAAAAACACGGCTATCATACTGAAGAAC    376
                     |||||.||| |||| .|||.|.||.|.|.||||.|..|||..||||||..
BL03604___ydh    292 TCTGATATCTCCGG-GATTCTGCATACATACGGATTCCATGATGAAGACA    340

BSNT_00995___    377 TTTTATCTGACGATTCAAGGTGGACATTGCTCGAACAGCCCGCACCGGAG    426
                     |.||||.||||||...||..|||||..||||.||.|||||.||.||....
BL03604___ydh    341 TCTTATATGACGAGCAAAAATGGACGCTGCTGGAGCAGCCGGCTCCTTCA    390

BSNT_00995___    427 CTGTGTGCTGATCGGACAGACTATACGCTGCGTGA-TATATA-CCGATAT    474
                     .|.|||||.|||||.|..||.||.|||||.||.|| |.|.|| ||  |||
BL03604___ydh    391 TTATGTGCGGATCGCATCGATTACACGCTTCGCGACTCTTTAGCC--TAT    438

BSNT_00995___    475 GGACACATT-----AACC---------TGCACGAAGCGCAAACCTTTTTG    510
                     ||    |||     |.||         ||.||||          |||||.
BL03604___ydh    439 GG----ATTTGGCGATCCGGTAGAGATTGGACGA----------TTTTTA    474

BSNT_00995___    511 GATCATCT-TATTG-----TGAGAAACGGAAGG----ATGT-------TT    543
                     ||  |.|| .||||     ||     |.|||||    ||.|       ||
BL03604___ydh    475 GA--AACTGGATTGACCGTTG-----CTGAAGGCGAAATCTGCTGCACTT    517

BSNT_00995___    544 C--CAGATAGTATTGAAGC-TGGCGAATGGTTTGTCAGTGTGTACTA-CA    589
                     |  |||          ||| ||.|||||||||.|.|.|..|.||||| ||
BL03604___ydh    518 CGGCAG----------AGCATGCCGAATGGTTCGCCCGCCTTTACTATCA    557

BSNT_00995___    590 AGGAAGTAATTGATTTCTTTTTGAATCCTGTGAATGTATATG-GATATGA    638
                     | |||||.|||||.||||||.|||||||..|.|||.|||||| |.|.||.
BL03604___ydh    558 A-GAAGTGATTGACTTCTTTATGAATCCCCTCAATATATATGCGCTCTGT    606

BSNT_00995___    639 ATATTTAGC-----GCGAGCATTGAAGGCAGCGCTGCGGCATG-ATGTCA    682
                     |...|.|||     ||      ||||.|..||||| .|.|||| .|||.|
BL03604___ydh    607 ACCCTCAGCCAAATGC------TGAAAGAGGCGCT-TGACATGCGTGTTA    649

BSNT_00995___    683 TATCCGCAGAG-GATCTGCTGAAAACGGACCAAGAGGTACTGAACATCCT    731
                     | |.||..|.| |||.|..|.|||||.|||        ||.||||..|.|
BL03604___ydh    650 T-TGCGGGGCGCGATTTTTTCAAAACCGAC--------ACGGAACTGCTT    690

BSNT_00995___    732 GCG-TGC---ATCAAAAAATGAAGAAGTTCTGAGCTTGCTTACATCCATT    777
                     ||| |||   |.|||||               |||..||||         
BL03604___ydh    691 GCGATGCTAAAGCAAAA---------------AGCGCGCTT---------    716

BSNT_00995___    778 CATCCCGGCATA--CAAGTAATAGAAGATGACATCCAGTA--CGATTTCC    823
                         ||||.|.|  |..|||| ||...|..|||.|.||.|  ||..||  
BL03604___ydh    717 ----CCGGGAAACGCTGGTAA-AGCTCAGCACAGCGAGCAAGCGCGTT--    759

BSNT_00995___    824 ATCAAAAGAAGAAAATGCGACTAA-TCGATCCATCCATTTT--TTTTGAT    870
                         |||.|||     |||||.|| .||        |||||  ||||.||
BL03604___ydh    760 ----AAACAAG-----GCGACGAAGGCG--------ATTTTACTTTTCAT    792

BSNT_00995___    871 -----------GGTGA-ATGGATC--------------------------    882
                                ||||| |||||||                          
BL03604___ydh    793 CAAACATTAAAGGTGAGATGGATCGATCCAAAAGTCGCTGTTAACGGAAG    842

BSNT_00995___    883 --AAATCCTC----------------AGA---TGCTTCTGA--AAAGGTG    909
                       ||||||.|                |||   |.|||||||  ||||   
BL03604___ydh    843 AAAAATCCCCGCCTCCACACTTTCAAAGAACGTCCTTCTGATGAAAG---    889

BSNT_00995___    910 AGGAAAATGGGTGAGGCCGCTTATCAAAAAGCA--AAAAAAGGTGTGTAT    957
                         |||.||.....|||||           ||  ||||||||.|..|||
BL03604___ydh    890 ----AAACGGCAATAGCCGC-----------CATGAAAAAAGGCGCATAT    924

BSNT_00995___    958 ATAAAA--ATCTTAAATCAGTAA    978
                     .|||||  |.|     .||.|||
BL03604___ydh    925 GTAAAAGCAGC-----CCAATAA    942


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