Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00995 and BL03604
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_00995___ydhJ.1.5803.seq
# -bsequence dna-align/BL03604___ydhJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00995___ydhJ-BL03604___ydhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00995___ydhJ-BL03604___ydhJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00995___ydhJ
# 2: BL03604___ydhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1123
# Identity: 599/1123 (53.3%)
# Similarity: 599/1123 (53.3%)
# Gaps: 326/1123 (29.0%)
# Score: 1471.0
#
#
#=======================================
BSNT_00995___ 1 ATGGAAATCAGCGATGTTATTTACGGGCACCACCATATAGACGGA----G 46
..||| |
BL03604___ydh 1 ----------------------------------------TTGGAGCCTG 10
BSNT_00995___ 47 TGCTGGAAGAGCTTA-----TCAAAAGCGCTCCTGTGCAAAGATTAAAAG 91
|||||..|||.||.| ||||||| |.||.||..|..|.||||
BL03604___ydh 11 TGCTGACAGACCTCATTCGTTCAAAAG-----CCGTTCAGCGTCTGAAAG 55
BSNT_00995___ 92 GAATCTATCAAGGCGGAGCAAGCTTTT-TAGTCAAT----CAAAAGTGGA 136
|.||..||||.|||||.|| ..||||| |.|||||| || ||||
BL03604___ydh 56 GGATTCATCAGGGCGGGGC-CTCTTTTCTCGTCAATCCCGCA----TGGA 100
BSNT_00995___ 137 ATGTGACCAGATATGAGCACTGCATCGGCGTAATGCTCCTCATCAAAAAG 186
|..|.|.|.|.|.|||||||.|||||||.||.|||||..|.|||...|.|
BL03604___ydh 101 ACATCAGCCGCTGTGAGCACAGCATCGGAGTTATGCTTTTGATCCGCAGG 150
BSNT_00995___ 187 CTCGGAGGAACGATAGAAGAACAGATTGCGGGTCTGCTCCACGACGTATC 236
||.||.||||...|.|||||.||.|||||.|||.||||||||||.||.||
BL03604___ydh 151 CTTGGCGGAAGCCTGGAAGAGCAAATTGCAGGTTTGCTCCACGATGTTTC 200
BSNT_00995___ 237 ACACACAGCTTTTTCTCATGTGGTCGACGTTGTCTTT------GAAAATC 280
.||.||.||.|||||.|||||||..||.|.|||.||| |||||
BL03604___ydh 201 CCATACGGCATTTTCCCATGTGGCTGATGATGTATTTAACATGGAAAA-- 248
BSNT_00995___ 281 AAGCAGAAGACTATCATGAAAACATCTTTCAACAA---GTCATTGTTCAC 327
.|||||.||.||||||.|.||.||||..||| |||| ..||.
BL03604___ydh 249 ----CGAAGATTACCATGAACAGATGTTTCGGCAATGGGTCA---AGCAA 291
BSNT_00995___ 328 TCTGAAATC-CCGGACATTTTACAAAAACACGGCTATCATACTGAAGAAC 376
|||||.||| |||| .|||.|.||.|.|.||||.|..|||..||||||..
BL03604___ydh 292 TCTGATATCTCCGG-GATTCTGCATACATACGGATTCCATGATGAAGACA 340
BSNT_00995___ 377 TTTTATCTGACGATTCAAGGTGGACATTGCTCGAACAGCCCGCACCGGAG 426
|.||||.||||||...||..|||||..||||.||.|||||.||.||....
BL03604___ydh 341 TCTTATATGACGAGCAAAAATGGACGCTGCTGGAGCAGCCGGCTCCTTCA 390
BSNT_00995___ 427 CTGTGTGCTGATCGGACAGACTATACGCTGCGTGA-TATATA-CCGATAT 474
.|.|||||.|||||.|..||.||.|||||.||.|| |.|.|| || |||
BL03604___ydh 391 TTATGTGCGGATCGCATCGATTACACGCTTCGCGACTCTTTAGCC--TAT 438
BSNT_00995___ 475 GGACACATT-----AACC---------TGCACGAAGCGCAAACCTTTTTG 510
|| ||| |.|| ||.|||| |||||.
BL03604___ydh 439 GG----ATTTGGCGATCCGGTAGAGATTGGACGA----------TTTTTA 474
BSNT_00995___ 511 GATCATCT-TATTG-----TGAGAAACGGAAGG----ATGT-------TT 543
|| |.|| .|||| || |.||||| ||.| ||
BL03604___ydh 475 GA--AACTGGATTGACCGTTG-----CTGAAGGCGAAATCTGCTGCACTT 517
BSNT_00995___ 544 C--CAGATAGTATTGAAGC-TGGCGAATGGTTTGTCAGTGTGTACTA-CA 589
| ||| ||| ||.|||||||||.|.|.|..|.||||| ||
BL03604___ydh 518 CGGCAG----------AGCATGCCGAATGGTTCGCCCGCCTTTACTATCA 557
BSNT_00995___ 590 AGGAAGTAATTGATTTCTTTTTGAATCCTGTGAATGTATATG-GATATGA 638
| |||||.|||||.||||||.|||||||..|.|||.|||||| |.|.||.
BL03604___ydh 558 A-GAAGTGATTGACTTCTTTATGAATCCCCTCAATATATATGCGCTCTGT 606
BSNT_00995___ 639 ATATTTAGC-----GCGAGCATTGAAGGCAGCGCTGCGGCATG-ATGTCA 682
|...|.||| || ||||.|..||||| .|.|||| .|||.|
BL03604___ydh 607 ACCCTCAGCCAAATGC------TGAAAGAGGCGCT-TGACATGCGTGTTA 649
BSNT_00995___ 683 TATCCGCAGAG-GATCTGCTGAAAACGGACCAAGAGGTACTGAACATCCT 731
| |.||..|.| |||.|..|.|||||.||| ||.||||..|.|
BL03604___ydh 650 T-TGCGGGGCGCGATTTTTTCAAAACCGAC--------ACGGAACTGCTT 690
BSNT_00995___ 732 GCG-TGC---ATCAAAAAATGAAGAAGTTCTGAGCTTGCTTACATCCATT 777
||| ||| |.||||| |||..||||
BL03604___ydh 691 GCGATGCTAAAGCAAAA---------------AGCGCGCTT--------- 716
BSNT_00995___ 778 CATCCCGGCATA--CAAGTAATAGAAGATGACATCCAGTA--CGATTTCC 823
||||.|.| |..|||| ||...|..|||.|.||.| ||..||
BL03604___ydh 717 ----CCGGGAAACGCTGGTAA-AGCTCAGCACAGCGAGCAAGCGCGTT-- 759
BSNT_00995___ 824 ATCAAAAGAAGAAAATGCGACTAA-TCGATCCATCCATTTT--TTTTGAT 870
|||.||| |||||.|| .|| ||||| ||||.||
BL03604___ydh 760 ----AAACAAG-----GCGACGAAGGCG--------ATTTTACTTTTCAT 792
BSNT_00995___ 871 -----------GGTGA-ATGGATC-------------------------- 882
||||| |||||||
BL03604___ydh 793 CAAACATTAAAGGTGAGATGGATCGATCCAAAAGTCGCTGTTAACGGAAG 842
BSNT_00995___ 883 --AAATCCTC----------------AGA---TGCTTCTGA--AAAGGTG 909
||||||.| ||| |.||||||| ||||
BL03604___ydh 843 AAAAATCCCCGCCTCCACACTTTCAAAGAACGTCCTTCTGATGAAAG--- 889
BSNT_00995___ 910 AGGAAAATGGGTGAGGCCGCTTATCAAAAAGCA--AAAAAAGGTGTGTAT 957
|||.||.....||||| || ||||||||.|..|||
BL03604___ydh 890 ----AAACGGCAATAGCCGC-----------CATGAAAAAAGGCGCATAT 924
BSNT_00995___ 958 ATAAAA--ATCTTAAATCAGTAA 978
.||||| |.| .||.|||
BL03604___ydh 925 GTAAAAGCAGC-----CCAATAA 942
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