Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05282 and BL03603

See Amino acid alignment / Visit BSNT_05282 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_05282___yvcT.1.5803.seq
#    -bsequence dna-align/BL03603___yvcT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05282___yvcT-BL03603___yvcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05282___yvcT-BL03603___yvcT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05282___yvcT
# 2: BL03603___yvcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity:     687/1031 (66.6%)
# Similarity:   687/1031 (66.6%)
# Gaps:         115/1031 (11.2%)
# Score: 2062.5
# 
#
#=======================================

BSNT_05282___      1 TTGAAACCATTTGTATTTATCACAAAACCGATTCCTGAAGAGATTGAAG-     49
                     .|||||||.|||||||.|.|||||||||||.|.||..||||.||.|||| 
BL03603___yvc      1 ATGAAACCGTTTGTATATGTCACAAAACCGGTCCCAAAAGAAATCGAAGA     50

BSNT_05282___     50 CATTCATCGGAGAACATTGCCGTTATGAAGTATG------GCAGGAGGAT     93
                     .||.| |||..|||||||||...||||||.|.||      ||..|||..|
BL03603___yvc     51 GATGC-TCGCTGAACATTGCGAATATGAAATTTGGACTTCGCGCGAGCGT     99

BSNT_05282___     94 ACGCTTCCGAGTGACG----TGCTATTTGAAAAATTAAAAGAAGCGGAAG    139
                     |   ||||.|| .|||    |||   |.||.|||.|.||.||||||||.|
BL03603___yvc    100 A---TTCCCAG-AACGACCCTGC---TCGAGAAAATCAAGGAAGCGGACG    142

BSNT_05282___    140 GGCTTTTAACATCAGGGAC-----GTCCGGACCGTCAAT-------CAAT    177
                     |.|||||.||.|||||.||     .|   ||||||.|||       ||||
BL03603___yvc    143 GCCTTTTGACCTCAGGAACAAAAATT---GACCGTGAATTATTATCCAAT    189

BSNT_05282___    178 CGTGAGTTGCTGGAACACGCTCCTAAGCTCAAAGTGGTCAGCAACCAATC    227
                                       ||.|..|||.|.|||.|.|||||||||.|.||
BL03603___yvc    190 ------------------GCACTGAAGTTAAAAATCGTCAGCAACAATTC    221

BSNT_05282___    228 AGTAGGCTACGATAATTTCGATATAGAAGCAATGAAAGAAAGAGGAGTAA    277
                     .||.|||||.||.||.||.|||||.||||||||||||||||.|...||.|
BL03603___yvc    222 CGTCGGCTATGACAACTTTGATATTGAAGCAATGAAAGAAAAATCGGTCA    271

BSNT_05282___    278 TCGGCACTCATACACCTTATACACTGGATGACACAGTTGCAGATCTGGCC    327
                     |||||||.|||||.||.||||..||.||.||||||||.|||||.||.|| 
BL03603___yvc    272 TCGGCACCCATACGCCATATATTCTTGACGACACAGTCGCAGACCTTGC-    320

BSNT_05282___    328 TTTTC--TCTGATTCTATCTTCCGCCAGACGTGTTGCCGAACTTGACCGT    375
                      ||||  ||||||.||.||.||.||..|.||..|.|||||.||.|||||.
BL03603___yvc    321 -TTTCGGTCTGATCCTTTCCTCAGCTCGGCGAATCGCCGAGCTCGACCGC    369

BSNT_05282___    376 TTTGTCAGGGCAGGAAAATGGGGGACC------GTGGAAGAGGAAGCGCT    419
                     |..|||.|.|..|||||||   |||||      |.|||.||.||| .|||
BL03603___yvc    370 TACGTCCGCGAGGGAAAAT---GGACCAAATCAGAGGACGATGAA-AGCT    415

BSNT_05282___    420 T-TTCGGAATTGATGTTCATCATCAAACATTAGGCATTATCGGCATGGGC    468
                     | ||||||..||||||.|||||.|..||..|.|||||.|||||.|||||.
BL03603___yvc    416 TGTTCGGATCTGATGTCCATCACCGGACGCTCGGCATCATCGGAATGGGA    465

BSNT_05282___    469 AGAATAGGAGAACAAGCAGCGAGACGCGCCAAATTTGGTTTTGATATGGA    518
                     .||||.||.|||||||..||.|.|||.||....||.||||||||||||||
BL03603___yvc    466 CGAATCGGCGAACAAGTCGCCAAACGGGCGGCCTTGGGTTTTGATATGGA    515

BSNT_05282___    519 AGTGCTTTATCATAACCGACA-TCGCAAACAAGAAACAGAAGATAGCATC    567
                     ||||||.|||.|.|.||| || .|||||||..||.|||||..|.|..|.|
BL03603___yvc    516 AGTGCTCTATTACAGCCG-CAGCCGCAAACCCGATACAGAGAAAAAAACC    564

BSNT_05282___    568 GGC---GTTAAGTATGCAGAGCTTGATACAT----TGCTGGAGCGATCTG    610
                     |||   |||   |||.| |.|||   |.|||    ||.|||||||.||.|
BL03603___yvc    565 GGCGCGGTT---TATAC-GGGCT---TTCATGAGCTGTTGGAGCGCTCGG    607

BSNT_05282___    611 ATTTTATTCTTCTCATTACGCCGCTGACTGATGAAACCTATCACATGATA    660
                     ||||.|||.||||..|.||.|||||.||.|||||.||.||.|.|.|.||.
BL03603___yvc    608 ATTTCATTGTTCTGGTCACACCGCTCACGGATGAGACATACCGCCTCATC    657

BSNT_05282___    661 GGAGAACGC-GAATTTAAGTTGATGAAGGATTCAGCAATTTTCGTCAATA    709
                     ||.||| || |||||.||....|||||....||..|.||||||.||||.|
BL03603___yvc    658 GGCGAA-GCAGAATTCAAAAAAATGAAACCGTCGTCCATTTTCATCAACA    706

BSNT_05282___    710 TTTCCCGGGGAAAGACAGTTGATGAGAAAGCACTGATTCGCGCTCTTCAG    759
                     |.|||||.||.||.||||||||.||..||||..||||||..||.||..|.
BL03603___yvc    707 TCTCCCGCGGTAAAACAGTTGACGAACAAGCGTTGATTCAAGCGCTGAAA    756

BSNT_05282___    760 GAAGGCTGGATCAGGGGAGCCGGCCTAGATGTATACGAAAAAGAGCCTGT    809
                     |||||.|||||.|..||||||||.||.|||||||..|||||||||||..|
BL03603___yvc    757 GAAGGATGGATTAAAGGAGCCGGACTTGATGTATTTGAAAAAGAGCCGAT    806

BSNT_05282___    810 CTCCCAAGATAATCCGCTCCT--GCAGCTGGATAATGTCACGCTGCTTCC    857
                     .....||||.|||||||||||  ||  ||....|||||.||.||..||||
BL03603___yvc    807 TGAAAAAGACAATCCGCTCCTAAGC--CTTTCCAATGTAACCCTTGTTCC    854

BSNT_05282___    858 TCATATCGGTTCAGCAACAGCTAAAGTG-----CGCTTCAACATG-TGTA    901
                     .||.||.||.|||.|  ||.|.|   ||     |.|.|||||||| ||.|
BL03603___yvc    855 CCACATTGGATCATC--CACCCA---TGTCACACACGTCAACATGCTGAA    899

BSNT_05282___    902 AACAGGCTGCCG---AAAATATGATCG-CAGCCATTCAAGGACAAAC-AC    946
                     ||   || ||||   ||||..||||.| |.|.| ||| |||.||||| .|
BL03603___yvc    900 AA---GC-GCCGTTCAAAACCTGATTGACGGTC-TTC-AGGGCAAACGGC    943

BSNT_05282___    947 CGAAAAATCTCA--CAAGAGAATTTCAATAA    975
                     |.|||.||.| |  ||| ||||.|...||||
BL03603___yvc    944 CAAAAGATAT-AGTCAA-AGAACTGAGATAA    972


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