Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05282 and BL03603
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_05282___yvcT.1.5803.seq
# -bsequence dna-align/BL03603___yvcT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05282___yvcT-BL03603___yvcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05282___yvcT-BL03603___yvcT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05282___yvcT
# 2: BL03603___yvcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity: 687/1031 (66.6%)
# Similarity: 687/1031 (66.6%)
# Gaps: 115/1031 (11.2%)
# Score: 2062.5
#
#
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BSNT_05282___ 1 TTGAAACCATTTGTATTTATCACAAAACCGATTCCTGAAGAGATTGAAG- 49
.|||||||.|||||||.|.|||||||||||.|.||..||||.||.||||
BL03603___yvc 1 ATGAAACCGTTTGTATATGTCACAAAACCGGTCCCAAAAGAAATCGAAGA 50
BSNT_05282___ 50 CATTCATCGGAGAACATTGCCGTTATGAAGTATG------GCAGGAGGAT 93
.||.| |||..|||||||||...||||||.|.|| ||..|||..|
BL03603___yvc 51 GATGC-TCGCTGAACATTGCGAATATGAAATTTGGACTTCGCGCGAGCGT 99
BSNT_05282___ 94 ACGCTTCCGAGTGACG----TGCTATTTGAAAAATTAAAAGAAGCGGAAG 139
| ||||.|| .||| ||| |.||.|||.|.||.||||||||.|
BL03603___yvc 100 A---TTCCCAG-AACGACCCTGC---TCGAGAAAATCAAGGAAGCGGACG 142
BSNT_05282___ 140 GGCTTTTAACATCAGGGAC-----GTCCGGACCGTCAAT-------CAAT 177
|.|||||.||.|||||.|| .| ||||||.||| ||||
BL03603___yvc 143 GCCTTTTGACCTCAGGAACAAAAATT---GACCGTGAATTATTATCCAAT 189
BSNT_05282___ 178 CGTGAGTTGCTGGAACACGCTCCTAAGCTCAAAGTGGTCAGCAACCAATC 227
||.|..|||.|.|||.|.|||||||||.|.||
BL03603___yvc 190 ------------------GCACTGAAGTTAAAAATCGTCAGCAACAATTC 221
BSNT_05282___ 228 AGTAGGCTACGATAATTTCGATATAGAAGCAATGAAAGAAAGAGGAGTAA 277
.||.|||||.||.||.||.|||||.||||||||||||||||.|...||.|
BL03603___yvc 222 CGTCGGCTATGACAACTTTGATATTGAAGCAATGAAAGAAAAATCGGTCA 271
BSNT_05282___ 278 TCGGCACTCATACACCTTATACACTGGATGACACAGTTGCAGATCTGGCC 327
|||||||.|||||.||.||||..||.||.||||||||.|||||.||.||
BL03603___yvc 272 TCGGCACCCATACGCCATATATTCTTGACGACACAGTCGCAGACCTTGC- 320
BSNT_05282___ 328 TTTTC--TCTGATTCTATCTTCCGCCAGACGTGTTGCCGAACTTGACCGT 375
|||| ||||||.||.||.||.||..|.||..|.|||||.||.|||||.
BL03603___yvc 321 -TTTCGGTCTGATCCTTTCCTCAGCTCGGCGAATCGCCGAGCTCGACCGC 369
BSNT_05282___ 376 TTTGTCAGGGCAGGAAAATGGGGGACC------GTGGAAGAGGAAGCGCT 419
|..|||.|.|..||||||| ||||| |.|||.||.||| .|||
BL03603___yvc 370 TACGTCCGCGAGGGAAAAT---GGACCAAATCAGAGGACGATGAA-AGCT 415
BSNT_05282___ 420 T-TTCGGAATTGATGTTCATCATCAAACATTAGGCATTATCGGCATGGGC 468
| ||||||..||||||.|||||.|..||..|.|||||.|||||.|||||.
BL03603___yvc 416 TGTTCGGATCTGATGTCCATCACCGGACGCTCGGCATCATCGGAATGGGA 465
BSNT_05282___ 469 AGAATAGGAGAACAAGCAGCGAGACGCGCCAAATTTGGTTTTGATATGGA 518
.||||.||.|||||||..||.|.|||.||....||.||||||||||||||
BL03603___yvc 466 CGAATCGGCGAACAAGTCGCCAAACGGGCGGCCTTGGGTTTTGATATGGA 515
BSNT_05282___ 519 AGTGCTTTATCATAACCGACA-TCGCAAACAAGAAACAGAAGATAGCATC 567
||||||.|||.|.|.||| || .|||||||..||.|||||..|.|..|.|
BL03603___yvc 516 AGTGCTCTATTACAGCCG-CAGCCGCAAACCCGATACAGAGAAAAAAACC 564
BSNT_05282___ 568 GGC---GTTAAGTATGCAGAGCTTGATACAT----TGCTGGAGCGATCTG 610
||| ||| |||.| |.||| |.||| ||.|||||||.||.|
BL03603___yvc 565 GGCGCGGTT---TATAC-GGGCT---TTCATGAGCTGTTGGAGCGCTCGG 607
BSNT_05282___ 611 ATTTTATTCTTCTCATTACGCCGCTGACTGATGAAACCTATCACATGATA 660
||||.|||.||||..|.||.|||||.||.|||||.||.||.|.|.|.||.
BL03603___yvc 608 ATTTCATTGTTCTGGTCACACCGCTCACGGATGAGACATACCGCCTCATC 657
BSNT_05282___ 661 GGAGAACGC-GAATTTAAGTTGATGAAGGATTCAGCAATTTTCGTCAATA 709
||.||| || |||||.||....|||||....||..|.||||||.||||.|
BL03603___yvc 658 GGCGAA-GCAGAATTCAAAAAAATGAAACCGTCGTCCATTTTCATCAACA 706
BSNT_05282___ 710 TTTCCCGGGGAAAGACAGTTGATGAGAAAGCACTGATTCGCGCTCTTCAG 759
|.|||||.||.||.||||||||.||..||||..||||||..||.||..|.
BL03603___yvc 707 TCTCCCGCGGTAAAACAGTTGACGAACAAGCGTTGATTCAAGCGCTGAAA 756
BSNT_05282___ 760 GAAGGCTGGATCAGGGGAGCCGGCCTAGATGTATACGAAAAAGAGCCTGT 809
|||||.|||||.|..||||||||.||.|||||||..|||||||||||..|
BL03603___yvc 757 GAAGGATGGATTAAAGGAGCCGGACTTGATGTATTTGAAAAAGAGCCGAT 806
BSNT_05282___ 810 CTCCCAAGATAATCCGCTCCT--GCAGCTGGATAATGTCACGCTGCTTCC 857
.....||||.||||||||||| || ||....|||||.||.||..||||
BL03603___yvc 807 TGAAAAAGACAATCCGCTCCTAAGC--CTTTCCAATGTAACCCTTGTTCC 854
BSNT_05282___ 858 TCATATCGGTTCAGCAACAGCTAAAGTG-----CGCTTCAACATG-TGTA 901
.||.||.||.|||.| ||.|.| || |.|.|||||||| ||.|
BL03603___yvc 855 CCACATTGGATCATC--CACCCA---TGTCACACACGTCAACATGCTGAA 899
BSNT_05282___ 902 AACAGGCTGCCG---AAAATATGATCG-CAGCCATTCAAGGACAAAC-AC 946
|| || |||| ||||..||||.| |.|.| ||| |||.||||| .|
BL03603___yvc 900 AA---GC-GCCGTTCAAAACCTGATTGACGGTC-TTC-AGGGCAAACGGC 943
BSNT_05282___ 947 CGAAAAATCTCA--CAAGAGAATTTCAATAA 975
|.|||.||.| | ||| ||||.|...||||
BL03603___yvc 944 CAAAAGATAT-AGTCAA-AGAACTGAGATAA 972
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