Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00926 and BL03602

See Amino acid alignment / Visit BSNT_00926 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_00926___ydfF.1.5803.seq
#    -bsequence dna-align/BL03602___ydfF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00926___ydfF-BL03602___ydfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00926___ydfF-BL03602___ydfF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00926___ydfF
# 2: BL03602___ydfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 807
# Identity:     413/807 (51.2%)
# Similarity:   413/807 (51.2%)
# Gaps:         237/807 (29.4%)
# Score: 888.5
# 
#
#=======================================

BSNT_00926___      1 ------ATGAATCCTAATATTGCAAA-------AATCTCTTCGTTGCTAT     37
                           .|||||||.|||||.||..|       ||.||         |.|
BL03602___ydf      1 ATGAACGTGAATCCAAATATCGCCGAGGTCGCCAAGCT---------TGT     41

BSNT_00926___     38 CA--GATCCCTCGCGTTCTTCCATTCTT---CTCAGTCTGATGGATGGCA     82
                     ||  |||||.|||||..|..|.||| ||   |.||  .||.|.||||.|.
BL03602___ydf     42 CACCGATCCGTCGCGGGCGGCGATT-TTAACCGCA--TTGCTTGATGACC     88

BSNT_00926___     83 GG----ATAC----ACCCTGCGGGAGAGCTTGC---ATATCTCGCTAACA    121
                     ||    ||||    |||        |||||.||   ||||   ||....|
BL03602___ydf     89 GGTATTATACGGCTACC--------GAGCTGGCCGGATAT---GCGGGAA    127

BSNT_00926___    122 TTAAACCTCAAACCGCCAGTTTTCACCTGAATAAATTGCTTGAAGC---A    168
                     |.||.|..||.||.||.||.||||||||....||..|||||||.||   .
BL03602___ydf    128 TCAAGCAGCAGACAGCAAGCTTTCACCTTTCCAAGCTGCTTGACGCCGAG    177

BSNT_00926___    169 AAGCTGATTAGCGTAGAGAAGCATGGGAGACATCGGTATTACAGATTGTC    218
                     |.|||||...||  || ||||||.||..|.||.||.|||||||       
BL03602___ydf    178 ATGCTGACATGC--AG-GAAGCAAGGACGCCACCGCTATTACA-------    217

BSNT_00926___    219 TGACTCAGATGCTGCAAATGTGATCGAACAAT------------TGCTTC    256
                      |.||||.|..|.|.||    |||.|.|||||            |||||.
BL03602___ydf    218 -GGCTCAAAAACGGAAA----GATTGCACAATCGCTGGAGACCCTGCTTA    262

BSNT_00926___    257 ATATTGCGCCTAAAGC-AAAAGTCAAATCTTTAAAAGAGTCA---AAAG-    301
                     |.||.|||||....|| .|||.|| ..|||||.....|||||   .||| 
BL03602___ydf    263 ACATAGCGCCCCCTGCGGAAATTC-GCTCTTTCCGGCAGTCAGCTGAAGA    311

BSNT_00926___    302 ----------AGAAAAAGGACTTGCATTTCGCCCGTACCTGTTATGATCA    341
                               ||||||              ||.||.||.||.||||||||
BL03602___ydf    312 TCGGGCGGTCAGAAAA--------------GCGCGCACATGCTATGATCA    347

BSNT_00926___    342 TTTGGCAGGTTATGTGGGCGTGCAAATGGCACATTC--AT----TAGTTG    385
                     ..||||.||.|...|.||||| ||     |||.|.|  ||    |.||.|
BL03602___ydf    348 CCTGGCTGGATCGCTCGGCGT-CA-----CACTTGCGGATCGGCTCGTGG    391

BSNT_00926___    386 AGCAGGGGATGTTAAAAAAAGTTGA-------TTTAAACTTTGAGGTGAC    428
                     ||..|||..|.||.|||.|||..||       ||||.|       |||||
BL03602___ydf    392 AGATGGGCGTATTGAAAGAAGAAGAGACGGCTTTTACA-------GTGAC    434

BSNT_00926___    429 TTCAGAGGGTGCTTTATTCTTTTCAAAG---TTAGGCATCAATG-AAGAG    474
                     |..|||.||.|....||  ||||.||||   || ||||||.||| .||.|
BL03602___ydf    435 TGAAGAAGGGGAAGCAT--TTTTGAAAGAGCTT-GGCATCGATGTCAGGG    481

BSNT_00926___    475 CAACAACGGAATAAGA---GGAGAGCCTTTGCCCGCTGC------TGTTT    515
                         ||...||.||||   ||.|..|.|||      |||      ||..|
BL03602___ydf    482 ----AAGTCAAAAAGAAACGGCGCTCTTTT------TGCCATAAATGCCT    521

BSNT_00926___    516 GGATTGGAGTGAACGGCAGCATCATATTGCAGGAGCATTAGGAAACGCCC    565
                     |||||||||||||.|.|.||||||.|||||.||.||.|||||   |.||.
BL03602___ydf    522 GGATTGGAGTGAAAGACGGCATCACATTGCCGGCGCCTTAGG---CTCCG    568

BSNT_00926___    566 TATTG------------GTGCGCATGTTAGAAGAAGAGTGGATCGTTCGT    603
                     .||||            .|.||||||         |..|||||||..||.
BL03602___ydf    569 CATTGCTCGATGCCTTCATCCGCATG---------GGCTGGATCGAGCGG    609

BSNT_00926___    604 ATGCCTAAAACGAGAGCGATT--AGGATTA----------CACAAAGCGG    641
                     ...||..|.||..|.||..||  ||  |.|          |.||||   |
BL03602___ydf    610 CGCCCGCATACACGGGCCGTTGCAG--TCACGCCCGCCGGCGCAAA---G    654

BSNT_00926___    642 GAA---AATCGCGT--------------TTGAAAAGCACCTAAACGTGAA    674
                     |||   .|.|||.|              ||||||||.||       ||| 
BL03602___ydf    655 GAACTTTACCGCCTATTTCATATTTCCATTGAAAAGAAC-------TGA-    696

BSNT_00926___    675 GATTTAG    681
                            
BL03602___ydf    696 -------    696


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