Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00926 and BL03602
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00926___ydfF.1.5803.seq
# -bsequence dna-align/BL03602___ydfF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00926___ydfF-BL03602___ydfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00926___ydfF-BL03602___ydfF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00926___ydfF
# 2: BL03602___ydfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 807
# Identity: 413/807 (51.2%)
# Similarity: 413/807 (51.2%)
# Gaps: 237/807 (29.4%)
# Score: 888.5
#
#
#=======================================
BSNT_00926___ 1 ------ATGAATCCTAATATTGCAAA-------AATCTCTTCGTTGCTAT 37
.|||||||.|||||.||..| ||.|| |.|
BL03602___ydf 1 ATGAACGTGAATCCAAATATCGCCGAGGTCGCCAAGCT---------TGT 41
BSNT_00926___ 38 CA--GATCCCTCGCGTTCTTCCATTCTT---CTCAGTCTGATGGATGGCA 82
|| |||||.|||||..|..|.||| || |.|| .||.|.||||.|.
BL03602___ydf 42 CACCGATCCGTCGCGGGCGGCGATT-TTAACCGCA--TTGCTTGATGACC 88
BSNT_00926___ 83 GG----ATAC----ACCCTGCGGGAGAGCTTGC---ATATCTCGCTAACA 121
|| |||| ||| |||||.|| |||| ||....|
BL03602___ydf 89 GGTATTATACGGCTACC--------GAGCTGGCCGGATAT---GCGGGAA 127
BSNT_00926___ 122 TTAAACCTCAAACCGCCAGTTTTCACCTGAATAAATTGCTTGAAGC---A 168
|.||.|..||.||.||.||.||||||||....||..|||||||.|| .
BL03602___ydf 128 TCAAGCAGCAGACAGCAAGCTTTCACCTTTCCAAGCTGCTTGACGCCGAG 177
BSNT_00926___ 169 AAGCTGATTAGCGTAGAGAAGCATGGGAGACATCGGTATTACAGATTGTC 218
|.|||||...|| || ||||||.||..|.||.||.|||||||
BL03602___ydf 178 ATGCTGACATGC--AG-GAAGCAAGGACGCCACCGCTATTACA------- 217
BSNT_00926___ 219 TGACTCAGATGCTGCAAATGTGATCGAACAAT------------TGCTTC 256
|.||||.|..|.|.|| |||.|.||||| |||||.
BL03602___ydf 218 -GGCTCAAAAACGGAAA----GATTGCACAATCGCTGGAGACCCTGCTTA 262
BSNT_00926___ 257 ATATTGCGCCTAAAGC-AAAAGTCAAATCTTTAAAAGAGTCA---AAAG- 301
|.||.|||||....|| .|||.|| ..|||||.....||||| .|||
BL03602___ydf 263 ACATAGCGCCCCCTGCGGAAATTC-GCTCTTTCCGGCAGTCAGCTGAAGA 311
BSNT_00926___ 302 ----------AGAAAAAGGACTTGCATTTCGCCCGTACCTGTTATGATCA 341
|||||| ||.||.||.||.||||||||
BL03602___ydf 312 TCGGGCGGTCAGAAAA--------------GCGCGCACATGCTATGATCA 347
BSNT_00926___ 342 TTTGGCAGGTTATGTGGGCGTGCAAATGGCACATTC--AT----TAGTTG 385
..||||.||.|...|.||||| || |||.|.| || |.||.|
BL03602___ydf 348 CCTGGCTGGATCGCTCGGCGT-CA-----CACTTGCGGATCGGCTCGTGG 391
BSNT_00926___ 386 AGCAGGGGATGTTAAAAAAAGTTGA-------TTTAAACTTTGAGGTGAC 428
||..|||..|.||.|||.|||..|| ||||.| |||||
BL03602___ydf 392 AGATGGGCGTATTGAAAGAAGAAGAGACGGCTTTTACA-------GTGAC 434
BSNT_00926___ 429 TTCAGAGGGTGCTTTATTCTTTTCAAAG---TTAGGCATCAATG-AAGAG 474
|..|||.||.|....|| ||||.|||| || ||||||.||| .||.|
BL03602___ydf 435 TGAAGAAGGGGAAGCAT--TTTTGAAAGAGCTT-GGCATCGATGTCAGGG 481
BSNT_00926___ 475 CAACAACGGAATAAGA---GGAGAGCCTTTGCCCGCTGC------TGTTT 515
||...||.|||| ||.|..|.||| ||| ||..|
BL03602___ydf 482 ----AAGTCAAAAAGAAACGGCGCTCTTTT------TGCCATAAATGCCT 521
BSNT_00926___ 516 GGATTGGAGTGAACGGCAGCATCATATTGCAGGAGCATTAGGAAACGCCC 565
|||||||||||||.|.|.||||||.|||||.||.||.||||| |.||.
BL03602___ydf 522 GGATTGGAGTGAAAGACGGCATCACATTGCCGGCGCCTTAGG---CTCCG 568
BSNT_00926___ 566 TATTG------------GTGCGCATGTTAGAAGAAGAGTGGATCGTTCGT 603
.|||| .|.|||||| |..|||||||..||.
BL03602___ydf 569 CATTGCTCGATGCCTTCATCCGCATG---------GGCTGGATCGAGCGG 609
BSNT_00926___ 604 ATGCCTAAAACGAGAGCGATT--AGGATTA----------CACAAAGCGG 641
...||..|.||..|.||..|| || |.| |.|||| |
BL03602___ydf 610 CGCCCGCATACACGGGCCGTTGCAG--TCACGCCCGCCGGCGCAAA---G 654
BSNT_00926___ 642 GAA---AATCGCGT--------------TTGAAAAGCACCTAAACGTGAA 674
||| .|.|||.| ||||||||.|| |||
BL03602___ydf 655 GAACTTTACCGCCTATTTCATATTTCCATTGAAAAGAAC-------TGA- 696
BSNT_00926___ 675 GATTTAG 681
BL03602___ydf 696 ------- 696
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