Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03882 and BL03600

See Amino acid alignment / Visit BSNT_03882 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_03882___yrdF.1.5803.seq
#    -bsequence dna-align/BL03600___yrdF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03882___yrdF-BL03600___yrdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03882___yrdF-BL03600___yrdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03882___yrdF
# 2: BL03600___yrdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 312
# Identity:     174/312 (55.8%)
# Similarity:   174/312 (55.8%)
# Gaps:          72/312 (23.1%)
# Score: 411.0
# 
#
#=======================================

BSNT_03882___      1 ATGAGAAAAATAATGATAGATGGAAGAGACTTTGAAAATAT-TGAAGTTT     49
                     ||||.|.||.|.|...||.|.|||         |||||.|| .|||||.|
BL03600___yrd      1 ATGAAACAAGTCACTTTAAAAGGA---------GAAAAGATCAGAAGTGT     41

BSNT_03882___     50 TACATGATGTT---------TTAAAAGATAAATTAGA-CTTCCCAGACTA     89
                     ..|| |||.||         ||||||||..|..|.|| ||| ||.|||||
BL03600___yrd     42 ATCA-GATCTTCACAAAGAATTAAAAGAACAGCTGGAGCTT-CCTGACTA     89

BSNT_03882___     90 CTATGGAGGAAATTTAGACGCTTTATGGGATTGCCTGACAGGGTGGGTGG    139
                     ||||||.|.||||.|.||.||..|.||||||||.|||||.||.|||||.|
BL03600___yrd     90 CTATGGCGAAAATCTTGATGCGCTGTGGGATTGTCTGACCGGCTGGGTCG    139

BSNT_03882___    140 ATTTGCC---GCTTACTTTAGTCTTGATAAATTTTGAGTTTAGTAAAAAG    186
                     ...||||   |||.|   |||..|.||..|||.|.|||       |||||
BL03600___yrd    140 GCATGCCTTTGCTGA---TAGAGTGGAAGAATGTCGAG-------AAAAG    179

BSNT_03882___    187 -----TTT--TTAGGTTCATACGCTAATGATG-----TATTAGAAG-TTT    223
                          |||  ||.||      ||.|.|.|..|     ||||.|.|| |||
BL03600___yrd    180 CCGGATTTACTTGGG------CGATCAAGCCGAGGCATATTTGCAGCTTT    223

BSNT_03882___    224 TACAAGAGGCTCAAGAGGAATTAAA----GGACGAGTTTAAAATAATAAT    269
                     |.|..||.||..|||       |||    |||||..|||.|..|.|.||.
BL03600___yrd    224 TTCGCGAAGCCGAAG-------AAACACTGGACGGCTTTCAGCTGAAAAC    266

BSNT_03882___    270 AGAATAG-----    276
                     |||  ||     
BL03600___yrd    267 AGA--AGGATGA    276


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