Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05319 and BL03597
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_05319___yvpA.1.5803.seq
# -bsequence dna-align/BL03597___yvpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05319___yvpA-BL03597___yvpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05319___yvpA-BL03597___yvpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05319___yvpA
# 2: BL03597___yvpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 477/707 (67.5%)
# Similarity: 477/707 (67.5%)
# Gaps: 82/707 (11.6%)
# Score: 1495.5
#
#
#=======================================
BSNT_05319___ 1 TTGAAAAAAAT--------CGTGTCTATCCTATTTATGTTCGGTTTGGT- 41
.||||.|.|.| || || ||||| |||..||||||.|
BL03597___yvp 1 ATGAAGAGATTAGCAGGTACG-GT------TATTT-TGTCAGGTTTGCTC 42
BSNT_05319___ 42 -TAT--GGGTTTCAGCCAGTTTCAGCCATCAACCGTTTTTGCAGCTGACA 88
||| |||||| .|.|||..||.|||...||..|.|||.||.|| |.
BL03597___yvp 43 GTATGCGGGTTT-GGACAGGCTCTGCCTGAAAAAGCTTTGGCCGC---CG 88
BSNT_05319___ 89 AAGTGGTGCACGAAACAATTATCGTA--CCAAAAAATAC-AACATATGAC 135
|.||.||.|||.|||| .|||||| |.|.|||...| |||.||||||
BL03597___yvp 89 AGGTCGTTCACAAAAC---GATCGTAGTCGAGAAAGGCCAAACGTATGAC 135
BSNT_05319___ 136 GGGAAAGGACAGCGGTTTGTGGCAGGGAAAGAATTAGGCGACGGAAGCCA 185
||.|||||..|||||.|..|.|||||....||..|.||.|||||.|||||
BL03597___yvp 136 GGAAAAGGCAAGCGGCTGATTGCAGGTCCGGAGCTCGGGGACGGCAGCCA 185
BSNT_05319___ 186 --------GTCAGAAAACCAAGACCCTGTTTTTC-GTGTGGAAGATGGAG 226
.||| |||||| |.||||| ..|||||.|||||.|
BL03597___yvp 186 ACGCGAGGATCA-AAAACC--------GATTTTCAAAGTGGAGGATGGTG 226
BSNT_05319___ 227 CAACCCTGAAAAATGTGGTGCTTGGCGCACCTGCCGCTGATGGCGTGCAC 276
||||.||.||||||||.|||||||||||.|||||.||||||||.||.|||
BL03597___yvp 227 CAACGCTCAAAAATGTCGTGCTTGGCGCTCCTGCTGCTGATGGTGTTCAC 276
BSNT_05319___ 277 ACTTATGGAAACGTTAACATTCAGAATGTGAAATGGGAAGATGTTGGTGA 326
||.||||||||||.|..|||..|.||.||....|||||||||||.||.||
BL03597___yvp 277 ACATATGGAAACGCTTCCATAAACAACGTTGTTTGGGAAGATGTCGGCGA 326
BSNT_05319___ 327 GGATGCGTTAACGGTGAAGAAG-GAAGGAAAAGTGACGATCGACGGCGGT 375
.|||||.||.||.||.|| ||| |||||||..||.|||||..||||.||.
BL03597___yvp 327 AGATGCCTTGACTGTCAA-AAGCGAAGGAAGTGTCACGATAAACGGAGGA 375
BSNT_05319___ 376 TCTGCTCAAAAAGCGT----CAGATAAGATATTCCAAATCAATAAAGCCA 421
||.||.| .||.| |.||.||.||.||.||.||.||||||||.|
BL03597___yvp 376 TCGGCCC----GGCTTGCCGCGGACAAAATCTTTCAGATTAATAAAGCGA 421
BSNT_05319___ 422 GTACATTCACAGTGAAAAACTTCACGGCAGA-CAATGGCGGAAAGTTCAT 470
|.|||||.||.||||||||.||.||.||.|| ||| ||.||.||.|||||
BL03597___yvp 422 GCACATTTACCGTGAAAAATTTTACTGCCGATCAA-GGAGGCAAATTCAT 470
BSNT_05319___ 471 AAGACAGCTTGGCGGTTCAACCTT-----CCACGTTGATGTGATC---AT 512
..|.|||||.||.||.||.||.|| || |||.|| ||
BL03597___yvp 471 TCGCCAGCTCGGAGGCTCGACATTTAAAGCC--------GTGGTCAATAT 512
BSNT_05319___ 513 CGATAAGTGCACCATCACAAACATGAAGGAAGCGATATTCCGGACGGACA 562
.|||||.||.||.||.|||||||||||.||.|||||.|||||.||.||||
BL03597___yvp 513 TGATAACTGTACGATTACAAACATGAAAGAGGCGATCTTCCGAACCGACA 562
BSNT_05319___ 563 GCAAAACAAGCACGGTCAGAATGACAAATACACGCTACTCTAATGTCGGT 612
|||..|||||..|.||.|.|||||||||||||.|.|||||.||.||||||
BL03597___yvp 563 GCAGTACAAGTTCCGTTACAATGACAAATACAAGATACTCAAAAGTCGGT 612
BSNT_05319___ 613 CAAAAATGGATTGGTGTTCAGCATATTTACGAAAACAACAACACTC---A 659
||.||||||||.|||||..||||| ..||||.|||.| ||||.|| |
BL03597___yvp 613 CAGAAATGGATCGGTGTGAAGCAT-GCTACGGAAAGA--AACAATCATGA 659
BSNT_05319___ 660 ATTTTAA 666
|||||||
BL03597___yvp 660 ATTTTAA 666
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