Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01398 and BL03595

See Amino acid alignment / Visit BSNT_01398 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_01398.1.5803.seq
#    -bsequence dna-align/BL03595___yfiU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01398-BL03595___yfiU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01398-BL03595___yfiU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01398
# 2: BL03595___yfiU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1646
# Identity:     655/1646 (39.8%)
# Similarity:   655/1646 (39.8%)
# Gaps:         790/1646 (48.0%)
# Score: 2123.5
# 
#
#=======================================

BSNT_01398         1 ATGTCTGAAGCATTAACAGAGCAGAAAGGCCAAAAGTGGGC--GATCAGC     48
                         .||||                    ||||||||||||  .||.|  
BL03595___yfi      1 ----GTGAA--------------------CCAAAAGTGGGCTGTATTA--     24

BSNT_01398        49 CTGTTTACGATTGGTGTATTTATGGCTGCGCTAGATAACGGAATTATTTC     98
                     .||||||||||.||.||.|||||||||||..||||.|||||.||.|||||
BL03595___yfi     25 TTGTTTACGATCGGCGTGTTTATGGCTGCTTTAGACAACGGCATCATTTC     74

BSNT_01398        99 AGCTGCCTTAACAACGATAAACGAGTCGTTTGCCGTTTCTCCTTCCTGGG    148
                     |||.||..|.||.||.||.||.||.||.|||...||.||.||.||.||||
BL03595___yfi     75 AGCGGCACTGACGACAATCAATGATTCTTTTCAAGTATCCCCCTCATGGG    124

BSNT_01398       149 GATCATGGGGCATTACCCTTTATACGCTCGGTCTTAGC-GTCAGTGTGCC    197
                     ||.||||||||||.||.||||||||||||||| ||.|| |||||.||.||
BL03595___yfi    125 GAGCATGGGGCATCACGCTTTATACGCTCGGT-TTGGCAGTCAGCGTTCC    173

BSNT_01398       198 AATCGTCGGAAAGCTTTCCGACCGCTACGGCAGAAAAAAACTCTTTCTCA    247
                     .||||||||||||||.||.|||||.||.||..|.|||||.||.|||.|||
BL03595___yfi    174 GATCGTCGGAAAGCTGTCTGACCGGTATGGACGCAAAAAGCTGTTTATCA    223

BSNT_01398       248 TTGAGGT-TTGCCTGTTCGGACTTGGTTCTTTGCTTGTTGCTTTGAGCCA    296
                     |.||.|| ||| |||||.||....|||||..||||.|||||.||||||||
BL03595___yfi    224 TCGAAGTCTTG-CTGTTTGGCGCCGGTTCGCTGCTCGTTGCATTGAGCCA    272

BSNT_01398       297 AAGCTTCCCGCTCTTTCTGATATCGCGGCTGATTCAGGCGCTTGGAGGCG    346
                     ||.|||||||.|.||..||.|..||.||||||||||..|||||||.||.|
BL03595___yfi    273 AAACTTCCCGATGTTCTTGTTGGCGAGGCTGATTCAATCGCTTGGCGGAG    322

BSNT_01398       347 GCGGGATTTTCATCATCGGCAGCTCTCACATTCTCGCGACCCTTCCAAAG    396
                     ||||.||.||.||.|||||.|||||.||.||||||.|..|.||.||.||.
BL03595___yfi    323 GCGGAATCTTTATTATCGGGAGCTCGCATATTCTCACTGCGCTGCCTAAA    372

BSNT_01398       397 GAAAAACAGGGGAAGGCACTTGGGCTGCTT---GGCGCAATGAACGGGAT    443
                     |||||||||||.|..|| ||||||  ||||   ||.||.||||||||.||
BL03595___yfi    373 GAAAAACAGGGAACCGC-CTTGGG--GCTTTTAGGTGCGATGAACGGAAT    419

BSNT_01398       444 GGCCGCTGTGCTCGGGCCAAATATCGGAAGCTTTCTGCTTGATTGGACCG    493
                     .||.||.||||||||.||.||||||||.||||||.|..|.|||..|||||
BL03595___yfi    420 CGCGGCAGTGCTCGGTCCGAATATCGGCAGCTTTATTTTGGATATGACCG    469

BSNT_01398       494 GGTCTTGGCATTGGCTATTTTTGATTAATTTGCCGATTGCCGTGCTATTG    543
                     |....|||||.|||||.||||||||.||..|.||||||||||        
BL03595___yfi    470 GAAGCTGGCACTGGCTGTTTTTGATCAACCTTCCGATTGCCG--------    511

BSNT_01398       544 GTTGTTTTCGGC-----TCATAC-----------TTTATCGCGGAAACAA    577
                             |.||     ||||.|           ||.||...|||.||||
BL03595___yfi    512 --------CAGCACTGATCATCCTCAGCGTTCCATTGATGAAGGAGACAA    553

BSNT_01398       578 AAG------CACCTGAAGCTAAGCGCCTCGATGCGGCCGGAATCT-TCCT    620
                     |||      |||  ||    ||.|.|||.|||..|||||||| || |..|
BL03595___yfi    554 AAGGCGGAACAC--GA----AAACCCCTAGATCTGGCCGGAA-CTGTGAT    596

BSNT_01398       621 TCTGTCCCTGTCGATTTTAGCCGTGATGTACGGCATGACGAACCTTGACG    670
                     ..||||.||..||||||||||.|||||||||||.||.|||||..|..|||
BL03595___yfi    597 ATTGTCTCTTGCGATTTTAGCTGTGATGTACGGAATAACGAATATAAACG    646

BSNT_01398       671 GGGTAAATCTCTTACACAG--------------CTTGGGGAATCCGGAGG    706
                     |              ||||              ||||....||||..|||
BL03595___yfi    647 G--------------ACAGCGCCTGTCTGCCGTCTTGTCCGATCCAAAGG    682

BSNT_01398       707 TTTATGGATGTATTATTT-------TTGGCAT--ACTCTGTTTTGCAGCG    747
                     ||||       .||.|||       |.||| |  .|.||| |||||.|..
BL03595___yfi    683 TTTA-------CTTTTTTCTCCTGATCGGC-TGCGCGCTG-TTTGCGGGA    723

BSNT_01398       748 CTTATCTCGTATGAAAAG-----AGAGTTGAAATGCGAGGAGGCGATCCC    792
                     ||.||.|..||.||||||     ||||.||||     .||||||||.||.
BL03595___yfi    724 CTCATTTTTTACGAAAAGCGCGTAGAGCTGAA-----GGGAGGCGACCCG    768

BSNT_01398       793 ATTTTGGCGTA----TTCTCTGCTGCGAAACCATATGTTTCAGCGCACGC    838
                     ||..|.||.||    ||.|    |...||||.|..|||||||..|.||||
BL03595___yfi    769 ATCCTTGCCTACAGTTTAT----TAAAAAACAAGGTGTTTCAATGGACGC    814

BSNT_01398       839 TTATCATCGGTTTGTTATCCGGGGGGCTCTTGGCGGCAGTCATTTTTATC    888
                     ||.|.|||||.||.||||||||.||.||||||||.||.||.||||||||.
BL03595___yfi    815 TTTTTATCGGATTTTTATCCGGCGGACTCTTGGCAGCCGTTATTTTTATT    864

BSNT_01398       889 CCGTCATATGTCGAGCAGTATTTGGGTGTCCCTGCCGCAAAAGCAGGCTA    938
                     ||..||||||..||.||.||||||...|||.||.|.|.||||||.||.||
BL03595___yfi    865 CCTGCATATGCGGAACAATATTTGCACGTCGCTCCTGAAAAAGCGGGGTA    914

BSNT_01398       939 TTGA----------------------------------------------    942
                     |||.                                              
BL03595___yfi    915 TTGGATGACGCCTCTTGCGCTGGCTTCAGGGATAGGAGCCGGGCTCGGCG    964

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi    965 GAATGCTCGCCGATCGAAAAGGACCGGTAAAGGCGGCCCGGCTCTCTGGC   1014

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1015 GTCATTTCGTTCGCCGGGTTTTTGCTCTTGTCCTCCTGGGTGACAGAGAA   1064

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1065 GTGGGAATTTGTTTTGGCAAGCATCATCGCAGGGGTCGGTTTTGGCTTTC   1114

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1115 TGTTAGGCGCGCCGTTAAATATGCTTGTATCCGAGGCGGCAAAACAGGAT   1164

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1165 TACGGGACAGCGCTCGGTACATTATCGCTCGTCAGGCAGATGGGGATGAC   1214

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1215 CTTGGCGCCCGCGCTGTATGCAGGATATATAACGGCCGGCTACGAAAATA   1264

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1265 TCGGCACACATATCAAACATAAGCTGAATGATGCAGGGATCACTCTGAAG   1314

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1315 GGGTTTGCAGGCGGTGAGACGGACGTATCAAGGCTGAGCGAATCCCTCAG   1364

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1365 CCAAATTTCCGACCCAAAAGTAAAAGACATCATAAGCGAAGCGATCCATG   1414

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1415 AAAGTGTGGGAGCGGGGTTTTTTAACCTCTACTTCACAGCCGCCGTCCTT   1464

BSNT_01398       942 --------------------------------------------------    942
                                                                       
BL03595___yfi   1465 TCACTTGCAGTCATTGCTTCTGTCAGCGTTTTATCGCTTTATAGGAAAAA   1514

BSNT_01398       942 ----------------------------------------------    942
                                                                   
BL03595___yfi   1515 ACAAACCGACACGGCAAGCCGTCTAAAAAAAGACGTGACAAACTAA   1560


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