Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05397 and BL03592
See
Amino acid alignment /
Visit
BSNT_05397 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_05397___yvhJ.1.5803.seq
# -bsequence dna-align/BL03592___yvhJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05397___yvhJ-BL03592___yvhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05397___yvhJ-BL03592___yvhJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05397___yvhJ
# 2: BL03592___yvhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1137
# Identity: 683/1137 (60.1%)
# Similarity: 683/1137 (60.1%)
# Gaps: 204/1137 (17.9%)
# Score: 2035.0
#
#
#=======================================
BSNT_05397___ 1 ATGCCAGAACG------AGTTAAGGTTCGTGTAAAGAAAAAAAAAAATAA 44
|||.|.||.|| |||.||.||.|| |||||||||.|||||
BL03592___yvh 1 ATGGCTGAGCGTATTAAAGTGAAAGTGCG------GAAAAAAAAGAATAA 44
BSNT_05397___ 45 A---CGAAAAATTATTTTAAAGCG---TATA----TTAT--TGCTCTTTT 82
| .|||...|.||| ||.|| |||| |||| |||||
BL03592___yvh 45 AAAGAGAAGGCTGATT---AAACGGTTTATAGTCCTTATGCTGCTC---- 87
BSNT_05397___ 83 TCCTATTTTCTATAGTATTCGCAGGAATAATTGG----ATATAAAGTATA 128
.|..||.|| |.|.|||..|| |.||| |||||||.| ||
BL03592___yvh 88 -GCACTTCTC----GCAGTCGGCGG----AGTGGGCATATATAAAAT-TA 127
BSNT_05397___ 129 TAAA-ACGCTTCAAGCAGCTGATAGTTCCTATAAAGAATTAGATCGTGGT 177
|||| |||.||...||.|||||..|..|.|||.|.||..|.||.||.||.
BL03592___yvh 128 TAAACACGATTTCCGCGGCTGACGGCACTTATGATGAGCTTGAACGCGGA 177
BSNT_05397___ 178 GAAAAGTCGAAATTACGCAAAGAAGTAGTTGATCTTAAGAAAAAACAACC 227
||.||||||||..|..|..|.||.||.||||||.|| .|||||.|.||
BL03592___yvh 178 GAGAAGTCGAAGCTCAGGGACGATGTTGTTGATATT---CAAAAAAAGCC 224
BSNT_05397___ 228 TTTTTCTGTACTTTTGTTAGGAGTCGAAGACTATGCAACA---GGCGGAA 274
.||.||..|.|||||..|.||.||.|||||.|||.|.||| ||||
BL03592___yvh 225 GTTCTCGATTCTTTTTATGGGGGTTGAAGATTATTCGACAAACGGCG--- 271
BSNT_05397___ 275 AAGGA-GGAAGAACCGATTCTATTATTGTCGCTACTATCAATCCTAAACA 323
||.| ||..|.||.|||||..|.|||||||..||..||.||||||||.|
BL03592___yvh 272 -AGCACGGCCGGACGGATTCCCTGATTGTCGTGACGCTCGATCCTAAAAA 320
BSNT_05397___ 324 AAAGACCATGAAGTTACTGAGCATTCCTCGAGATACAAGAGTTGAAATAT 373
.|||.|.|||||..|.|||||||||||.||.||.|||||.||| .||
BL03592___yvh 321 GAAGTCGATGAAAATGCTGAGCATTCCGCGGGACACAAGGGTT----CAT 366
BSNT_05397___ 374 CTG----GTGATACTTCTGGGACAAAAACGAGAATTAATTCTGCATATGG 419
.|| |.||.||..|.||.||||||||.|.|||||||.|.||.||||.
BL03592___yvh 367 TTGGCCAGCGACACAACCGGCACAAAAACAAAAATTAATGCGGCCTATGC 416
BSNT_05397___ 420 GAAAGGCGG---AGCTCAAACAACTGTTGAAACGGTTGAAAAGCTCTTAA 466
.|||||||| .|.|.|||||| ||||.||||||||..|..||.|..
BL03592___yvh 417 AAAAGGCGGCAAGGATGAAACAA---TTGAGACGGTTGAGGATTTCCTCG 463
BSNT_05397___ 467 ATATACCAATTGATTACTATGCTACTGTGGATTTTAAAGGCTTCAAAAAA 516
..||.||.||.||.||||||||.||.||.||||||.|.||.||.|||.|.
BL03592___yvh 464 GAATCCCGATCGACTACTATGCAACGGTCGATTTTGACGGGTTTAAAGAT 513
BSNT_05397___ 517 ACAATTGATGAAGTTGGTGGAGTTGATGTTGAGGTCCCCTTTGATTTTAA 566
...||.||||||.|.||.|||.|.|||||.||.||.||.|||||.||||.
BL03592___yvh 514 GTCATCGATGAAATCGGCGGAATCGATGTCGATGTGCCGTTTGACTTTAG 563
BSNT_05397___ 567 TGAGAAAAGTGATACATCAAAATCTAAAAAATTCTATTTTCAAAAAGGGA 616
.||.|||||.|||...||.|||||.||.|.|.||||||||.|||||||.|
BL03592___yvh 564 CGAAAAAAGCGATGTCTCCAAATCGAAGAGAATCTATTTTAAAAAAGGAA 613
BSNT_05397___ 617 ATATGCATCTAAATGGGGAAGAGGCTCTTGCCTATGCACGGATGAGAAAA 666
||||||||||||||||.||.||.|||||||||||.|||.|||||||||||
BL03592___yvh 614 ATATGCATCTAAATGGTGAGGAAGCTCTTGCCTACGCAAGGATGAGAAAA 663
BSNT_05397___ 667 CAAGATCCACGGGGTGACTTCGGGCGTAATGATAGACAAAAACAAATTTT 716
||.|||...||.||.|||||||||.|.||.||.|||||.||.||||||||
BL03592___yvh 664 CAGGATAAGCGTGGAGACTTCGGGAGAAACGACAGACAGAAGCAAATTTT 713
BSNT_05397___ 717 GATGGCC-ATGTTAGATCAAGTCTCAAAACCTTCTAATCTTGCAAAAATT 765
.|..||| .|.|| ||||||.||||||||||....||.||.||.||||||
BL03592___yvh 714 AAAAGCCGCTCTT-GATCAAATCTCAAAACCGCAAAACCTCGCTAAAATT 762
BSNT_05397___ 766 GATACCCTAGCAGATCAAGTAAGTGATAACATAACA-ACAAATTTAAGGA 814
|||||..|.||..|..|||.|||..|.||||| .|| ||.|||||.||.|
BL03592___yvh 763 GATACAATTGCCCAAAAAGCAAGCAAAAACAT-TCAGACGAATTTTAGAA 811
BSNT_05397___ 815 TTACCCAAGTCCTAGCACTTCAACAAATTTTTAGCGGTTTTAAAGGTAAC 864
|.||.||.|..||.||.|||||||||||||..|||||.|||...||..|.
BL03592___yvh 812 TCACGCAGGCGCTGGCGCTTCAACAAATTTACAGCGGCTTTGCCGGCGAT 861
BSNT_05397___ 865 GATGTTGAAACATTAACTCTAAAAGG-------CTCA-GATTTATATATC 906
|||.|..|||||||||...|.|.||| ||.| ||||
BL03592___yvh 862 GATATCAAAACATTAAACATCACAGGACAGGATCTTACGATT-------- 903
BSNT_05397___ 907 GGAAATAAGTACTTCTTTCAACCTGATGATGAAGAATTAAC-----AAAA 951
|.||||...||||.||||.|.|||||..|..|| ||| |||.
BL03592___yvh 904 GCAAATGTTTACTACTTTGAGCCTGACCAGCAA-----AACCTGGAAAAC 948
BSNT_05397___ 952 GTTCAAGAAGAACTTT-----ATAACTTTTTGTACCCTGATAAATAA--- 993
||.|||.|.||| || ||.| |||||||||.| |.|.|
BL03592___yvh 949 GTGCAAAATGAA--TTGACCCATCA---TTTGTACCCGG---ACTCAGCT 990
BSNT_05397___ 993 -------------------------------------------------- 993
BL03592___yvh 991 GCCGATTCGAGCGGAACATCGTCTGAATCTTCCGCAACCGCTGACGGTGC 1040
BSNT_05397___ 993 ------------------------------------- 993
BL03592___yvh 1041 GGACAGCTCAGCTGAATCGTCTGCTGCTTCTTATTGA 1077
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.