Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02362 and BL03588
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_02362___ykuN.1.5803.seq
# -bsequence dna-align/BL03588___ykuN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02362___ykuN-BL03588___ykuN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02362___ykuN-BL03588___ykuN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02362___ykuN
# 2: BL03588___ykuN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 508
# Identity: 339/508 (66.7%)
# Similarity: 339/508 (66.7%)
# Gaps: 59/508 (11.6%)
# Score: 1054.5
#
#
#=======================================
BSNT_02362___ 1 ATGGCTAAAGCCTTGATTACATATGCCAGCATGTCAGGAAATACAGAAGA 50
.||.|||||||.||||||.||||||||||||||||.||.||.||.||.||
BL03588___yku 1 TTGTCTAAAGCATTGATTGCATATGCCAGCATGTCCGGCAACACGGAGGA 50
BSNT_02362___ 51 CATTGCCTTCATAATAAAAGATACGCTTCAGGAATATGAGTTGGATAT-- 98
.||.||..|.||.||.||||||||..|.|..||.||.|..||.|||.|
BL03588___yku 51 TATCGCTATGATCATTAAAGATACATTGCGAGAGTACGGTTTTGATGTCA 100
BSNT_02362___ 99 CGATTGTGTCGAGATAGATGATATGGAT---GCGTC--TTGTTTAACCTC 143
|.|||..| ||.||.||||||.|.||| |..|| |.|.|.||
BL03588___yku 101 CCATTCAG--GAAATGGATGATGTCGATACCGACTCATTGGCTGAA---- 144
BSNT_02362___ 144 CTATGATTATGTACTGATTGGCACCTATACATGGGGGGACGGCGATTTGC 193
||||||..|.|..|.||.||||||||.||||||||||||||.|||.|.|
BL03588___yku 145 -TATGATCTTCTTTTAATCGGCACCTACACATGGGGGGACGGGGATCTTC 193
BSNT_02362___ 194 CCTACGAAGCGGAGGAT--TTTTTCGAAGAGGTCAAACAGATTCAGCTTA 241
|.||.|||||||| || ||||.||||||||||.....|.||.|.||||
BL03588___yku 194 CTTATGAAGCGGA--ATCGTTTTACGAAGAGGTCTCTTCGCTTGACCTTA 241
BSNT_02362___ 242 ATGGTTTAAAAACAGCCTGCTTCGGGTCTGGCGATTATTCTTATCCAAAG 291
|.||....|||.|.||.||||||||.||.|||||||||.|.||.||....
BL03588___yku 242 AAGGAAAGAAAGCGGCATGCTTCGGATCCGGCGATTATGCATACCCCCGA 291
BSNT_02362___ 292 TTTTGCGAAGCGGTGAA----TTTGTTCAATGTCATGC-TGCAAGAGGCG 336
||||||||||||||.|| ||| |.|| .||||| ||.|.||..||
BL03588___yku 292 TTTTGCGAAGCGGTCAACACGTTT-TACA---CCATGCTTGAACGAACCG 337
BSNT_02362___ 337 G----GAGCTGCTGTTTACCAGGAAACACTAAAAATTGAATTAGCGCCTG 382
| ||.| ||||.||.||.|||||.|||||.||..|.||.||||
BL03588___yku 338 GCGCCGACC-----TTTATCAAGAGACACTGAAAATAGAGCTTGCTCCTG 382
BSNT_02362___ 383 AAACAGATGAAGATGTGGAAAGCTGCCGAGCGTTTG-CGAGAGGTTTTCT 431
|||||||||||||||..||..|||||...|..|||| ||| |||.|||.|
BL03588___yku 383 AAACAGATGAAGATGCCGAGTGCTGCAAGGAATTTGCCGA-AGGCTTTAT 431
BSNT_02362___ 432 TGCATGGGCAGATTATATGAACAAGGAAAAA------------ATCCATG 469
...||||||| |||| ||.||||| |||||||
BL03588___yku 432 AAGATGGGCA--------GAAC-AGCAAAAACGGCGGGCTGAGATCCATG 472
BSNT_02362___ 470 TTTCATAA 477
||||||||
BL03588___yku 473 TTTCATAA 480
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